Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-467 |
| Cow position: | chr5:46005872-46005392 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 25 |
| Conread position: | 1-482 |
| Cow position: | chr5:57483039-57482554 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 309 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 207, 36 |
| Conread position: | 1-513 |
| Cow position: | chr5:2913958-2914480 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 1-610 |
| Cow position: | chr5:32945388-32945999 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 36 |
| Conread position: | 2-443 |
| Cow position: | chr5:18665470-18665915 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-482 |
| Cow position: | chr5:26079710-26079226 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-482 |
| Cow position: | chr5:27652480-27651990 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 2-482 |
| Cow position: | chr5:32733734-32733260 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 276, 43 |
| Conread position: | 2-482 |
| Cow position: | chr5:59481764-59482245 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-567 |
| Cow position: | chr5:29042020-29042593 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 350 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-577 |
| Cow position: | chr5:34202456-34203028 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 384 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-577 |
| Cow position: | chr5:39165289-39164707 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 384 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 2-578 |
| Cow position: | chr5:2530783-2531364 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 362 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 2-578 |
| Cow position: | chr5:32771990-32772575 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 174, 33 |
| Conread position: | 2-578 |
| Cow position: | chr5:54932709-54932125 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 365 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-610 |
| Cow position: | chr5:46630911-46630315 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 387 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 214, 41 |
| Conread position: | 3-571 |
| Cow position: | chr5:48468760-48468193 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 364 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 34 |
| Conread position: | 3-575 |
| Cow position: | chr5:49593949-49593365 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 378 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 39 |
| Conread position: | 4-484 |
| Cow position: | chr5:61020324-61019855 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 173, 38 |
| Conread position: | 4-578 |
| Cow position: | chr5:59060137-59060711 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 369 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 190, 44 |
| Conread position: | 4-614 |
| Cow position: | chr5:56858186-56857593 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 409 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 4-615 |
| Cow position: | chr5:46775601-46776210 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 41 |
| Conread position: | 5-424 |
| Cow position: | chr5:6188087-6188494 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 171, 40 |
| Conread position: | 5-482 |
| Cow position: | chr5:14379674-14380155 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 189, 30 |
| Conread position: | 6-587 |
| Cow position: | chr5:41359219-41358641 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 7-482 |
| Cow position: | chr5:41551407-41550935 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 183, 19 |
| Conread position: | 8-578 |
| Cow position: | chr5:58195517-58196095 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 186, 27 |
| Conread position: | 9-572 |
| Cow position: | chr5:32674219-32673653 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 368 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 185, 21 |
| Conread position: | 10-482 |
| Cow position: | chr5:3504734-3504258 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 10-571 |
| Cow position: | chr5:24576429-24577001 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 177, 25 |
| Conread position: | 11-577 |
| Cow position: | chr5:29008872-29009446 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 377 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 16-571 |
| Cow position: | chr5:26769337-26769890 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 353 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 174, 18 |
| Conread position: | 16-578 |
| Cow position: | chr5:45182579-45182010 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 364 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 171, 19 |
| Conread position: | 16-601 |
| Cow position: | chr5:28022690-28023272 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 32-482 |
| Cow position: | chr5:28031021-28031469 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 35-184 |
| Cow position: | chr5:24109496-24109348 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 37-348 |
| Cow position: | chr5:28570241-28570557 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 153, 36 |
| Conread position: | 40-541 |
| Cow position: | chr5:58056189-58055697 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 37 |
| Conread position: | 42-482 |
| Cow position: | chr5:6158649-6158205 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 32 |
| Conread position: | 43-579 |
| Cow position: | chr5:14346825-14346285 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 49-276 |
| Cow position: | chr5:27569705-27569943 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 50-482 |
| Cow position: | chr5:30578878-30579314 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-577 |
| Cow position: | chr5:9686858-9686334 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 251, 28 |
| Conread position: | 50-578 |
| Cow position: | chr5:46663557-46664096 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 345 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 50-578 |
| Cow position: | chr5:64782461-64781924 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-599 |
| Cow position: | chr5:4068546-4069104 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 362 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 51-577 |
| Cow position: | chr5:49181838-49182362 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 52-608 |
| Cow position: | chr5:49101197-49101758 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 376 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 134, 26 |
| Conread position: | 65-636 |
| Cow position: | chr5:51162488-51163054 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 389 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 89-269 |
| Cow position: | chr5:27488613-27488801 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 89-275 |
| Cow position: | chr5:30088125-30087933 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 47 |
| Conread position: | 92-276 |
| Cow position: | chr5:23227857-23228044 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 46 |
| Conread position: | 92-456 |
| Cow position: | chr5:57366420-57366058 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 93-571 |
| Cow position: | chr5:53627161-53626676 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 211 |
| Conread position: | 107-636 |
| Cow position: | chr5:49128854-49129371 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 36 |
| Conread position: | 115-638 |
| Cow position: | chr5:39872031-39872558 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 193 |
| Conread position: | 134-578 |
| Cow position: | chr5:58334945-58334503 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 139-610 |
| Cow position: | chr5:25001004-25000523 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 325 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 193-619 |
| Cow position: | chr5:26069008-26068593 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 143, 84 |
| Conread position: | 207-636 |
| Cow position: | chr5:52433694-52434119 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 130, 70 |
| Conread position: | 303-591 |
| Cow position: | chr5:24108776-24108487 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 92 |
Show alignments to all cow chromosomes.