Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-482 |
| Cow position: | chr6:701603-702089 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 155, 42 |
| Conread position: | 1-482 |
| Cow position: | chr6:3889837-3889345 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 1-482 |
| Cow position: | chr6:28274638-28275116 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-577 |
| Cow position: | chr6:8201382-8201972 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 368 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-578 |
| Cow position: | chr6:26671211-26670623 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 175, 34 |
| Conread position: | 2-246 |
| Cow position: | chr6:63198486-63198243 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 188, 43 |
| Conread position: | 2-481 |
| Cow position: | chr6:57870353-57869870 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 2-482 |
| Cow position: | chr6:19453579-19454050 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 2-557 |
| Cow position: | chr6:33388486-33389055 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 376 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 2-578 |
| Cow position: | chr6:1405586-1405003 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-578 |
| Cow position: | chr6:2554358-2554941 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 362 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-578 |
| Cow position: | chr6:13103709-13104293 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 356 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-578 |
| Cow position: | chr6:28491863-28491279 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-578 |
| Cow position: | chr6:34127002-34127588 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 358 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-609 |
| Cow position: | chr6:35433195-35433795 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 2-610 |
| Cow position: | chr6:38231930-38232547 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 395 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 3-578 |
| Cow position: | chr6:17598625-17598044 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 368 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 191, 32 |
| Conread position: | 4-276 |
| Cow position: | chr6:10054267-10054543 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 172, 31 |
| Conread position: | 4-578 |
| Cow position: | chr6:331813-331234 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 112, 31 |
| Conread position: | 5-617 |
| Cow position: | chr6:6566262-6566879 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 398 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 6-578 |
| Cow position: | chr6:65822468-65821891 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 354 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 8-578 |
| Cow position: | chr6:68026439-68027027 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 376 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 9-482 |
| Cow position: | chr6:5951579-5951112 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 9-578 |
| Cow position: | chr6:58409252-58408677 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 359 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 12-577 |
| Cow position: | chr6:8761644-8761070 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 375 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 27-263 |
| Cow position: | chr6:31569256-31569018 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 34-506 |
| Cow position: | chr6:42927071-42927540 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 153, 11 |
| Conread position: | 35-188 |
| Cow position: | chr6:59478530-59478382 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 37-480 |
| Cow position: | chr6:39161896-39162317 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 24 |
| Conread position: | 37-552 |
| Cow position: | chr6:34024526-34025013 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 36 |
| Conread position: | 40-411 |
| Cow position: | chr6:6619728-6619377 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 236, 37 |
| Conread position: | 50-269 |
| Cow position: | chr6:52804113-52804331 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 50-275 |
| Cow position: | chr6:47043734-47043502 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 50-278 |
| Cow position: | chr6:6476757-6476522 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 50-482 |
| Cow position: | chr6:3278253-3277816 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-482 |
| Cow position: | chr6:17045762-17046189 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 130, 28 |
| Conread position: | 50-482 |
| Cow position: | chr6:59919581-59919151 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 50-577 |
| Cow position: | chr6:36525740-36526281 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 353 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-577 |
| Cow position: | chr6:55544629-55544092 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 50-578 |
| Cow position: | chr6:2374404-2374935 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 137, 25 |
| Conread position: | 50-599 |
| Cow position: | chr6:59741351-59740799 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 371 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 28 |
| Conread position: | 50-622 |
| Cow position: | chr6:35877019-35876443 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 370 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 51-482 |
| Cow position: | chr6:20561410-20560978 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 52-425 |
| Cow position: | chr6:37642099-37642478 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 77-622 |
| Cow position: | chr6:10630191-10630721 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 13 |
| Conread position: | 78-388 |
| Cow position: | chr6:11353460-11353785 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 38, 225 |
| Conread position: | 86-322 |
| Cow position: | chr6:1384111-1383874 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 86-575 |
| Cow position: | chr6:15476019-15476519 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 347 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 88-288 |
| Cow position: | chr6:42564678-42564888 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 89-572 |
| Cow position: | chr6:525978-526463 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 217 |
| Conread position: | 92-526 |
| Cow position: | chr6:28474450-28474885 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 92-578 |
| Cow position: | chr6:34203253-34203739 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 93-295 |
| Cow position: | chr6:20496443-20496651 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 95-571 |
| Cow position: | chr6:30478839-30479327 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 102-482 |
| Cow position: | chr6:33459612-33459997 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 227 |
| Conread position: | 183-482 |
| Cow position: | chr6:24238902-24239199 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 155, 108 |
| Conread position: | 191-636 |
| Cow position: | chr6:6542811-6543254 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 238-480 |
| Cow position: | chr6:63198182-63197944 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 100, 54 |
| Conread position: | 299-534 |
| Cow position: | chr6:31568843-31568614 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 310-637 |
| Cow position: | chr6:69141998-69142324 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 408-637 |
| Cow position: | chr6:31637801-31637564 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 112 |
Show alignments to all cow chromosomes.