Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-519 |
| Cow position: | chr7:993974-994499 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 343 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 148, 34 |
| Conread position: | 1-519 |
| Cow position: | chr7:67416785-67417312 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 340 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 103, 44 |
| Conread position: | 1-553 |
| Cow position: | chr7:46902337-46901782 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 359 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 200, 36 |
| Conread position: | 1-557 |
| Cow position: | chr7:45949408-45948848 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 368 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 1-577 |
| Cow position: | chr7:34485649-34486239 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 366 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 151, 36 |
| Conread position: | 1-599 |
| Cow position: | chr7:67798591-67799199 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 379 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 2-415 |
| Cow position: | chr7:20307048-20306650 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 188, 43 |
| Conread position: | 2-449 |
| Cow position: | chr7:21975995-21975546 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 304 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 174, 40 |
| Conread position: | 2-469 |
| Cow position: | chr7:26850984-26851443 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 71 |
| Conread position: | 2-482 |
| Cow position: | chr7:1357921-1357462 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 2-482 |
| Cow position: | chr7:41870183-41869722 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 24 |
| Conread position: | 2-482 |
| Cow position: | chr7:54602592-54603075 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 309 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 165, 38 |
| Conread position: | 2-571 |
| Cow position: | chr7:17132-16554 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 363 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 2-571 |
| Cow position: | chr7:61558953-61559531 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 353 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-578 |
| Cow position: | chr7:3301414-3300831 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-578 |
| Cow position: | chr7:6643132-6642552 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 361 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-578 |
| Cow position: | chr7:6648909-6648331 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 365 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 189, 35 |
| Conread position: | 2-614 |
| Cow position: | chr7:23816226-23815610 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 385 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 185, 19 |
| Conread position: | 2-638 |
| Cow position: | chr7:41487332-41487938 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 33 |
| Conread position: | 5-386 |
| Cow position: | chr7:68436297-68435913 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 171, 16 |
| Conread position: | 6-482 |
| Cow position: | chr7:1611457-1610987 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 6-522 |
| Cow position: | chr7:51084368-51084874 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 183, 31 |
| Conread position: | 7-610 |
| Cow position: | chr7:63020597-63021201 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 8-480 |
| Cow position: | chr7:54515367-54514901 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 180, 30 |
| Conread position: | 8-578 |
| Cow position: | chr7:3234936-3234358 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 353 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 183, 15 |
| Conread position: | 9-578 |
| Cow position: | chr7:11446304-11446881 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 367 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 181, 13 |
| Conread position: | 10-442 |
| Cow position: | chr7:67811871-67812301 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 61 |
| Conread position: | 13-553 |
| Cow position: | chr7:55538169-55537619 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 356 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 23-388 |
| Cow position: | chr7:26883891-26884259 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 35-461 |
| Cow position: | chr7:65497016-65496612 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 309 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 35-637 |
| Cow position: | chr7:30119765-30119165 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 38 |
| Conread position: | 37-247 |
| Cow position: | chr7:41876706-41876504 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 153, 33 |
| Conread position: | 37-276 |
| Cow position: | chr7:27531085-27530846 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 153, 40 |
| Conread position: | 37-609 |
| Cow position: | chr7:59027792-59028349 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 41-609 |
| Cow position: | chr7:7297096-7296535 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 33 |
| Conread position: | 42-481 |
| Cow position: | chr7:26025815-26026258 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 43-575 |
| Cow position: | chr7:24808688-24808147 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 341 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 50-482 |
| Cow position: | chr7:14139809-14139377 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 141, 30 |
| Conread position: | 50-577 |
| Cow position: | chr7:39556300-39555772 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 347 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 118, 24 |
| Conread position: | 50-578 |
| Cow position: | chr7:20799644-20799121 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 345 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 50-632 |
| Cow position: | chr7:23835909-23836488 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 23 |
| Conread position: | 51-482 |
| Cow position: | chr7:26893538-26893974 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 52-419 |
| Cow position: | chr7:1405641-1405272 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 135, 21 |
| Conread position: | 52-568 |
| Cow position: | chr7:24056080-24056597 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 55-578 |
| Cow position: | chr7:20528882-20528350 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 86-560 |
| Cow position: | chr7:3729802-3730284 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 321 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 87-571 |
| Cow position: | chr7:1400537-1400042 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 332 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 89, 160 |
| Conread position: | 88-248 |
| Cow position: | chr7:25686390-25686232 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 88-571 |
| Cow position: | chr7:52120256-52119767 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 315 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 93-610 |
| Cow position: | chr7:68084617-68085151 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 96-609 |
| Cow position: | chr7:25101867-25102384 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 115-468 |
| Cow position: | chr7:26925186-26924829 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 169 |
| Conread position: | 183-482 |
| Cow position: | chr7:35297344-35297047 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 153, 137 |
| Conread position: | 186-614 |
| Cow position: | chr7:68478383-68478801 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 109 |
| Conread position: | 192-575 |
| Cow position: | chr7:27540421-27540042 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 139, 82 |
| Conread position: | 201-612 |
| Cow position: | chr7:58993144-58993552 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 203-622 |
| Cow position: | chr7:19048940-19048526 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 204-612 |
| Cow position: | chr7:27585147-27584752 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 150, 27 |
| Conread position: | 246-638 |
| Cow position: | chr7:63951838-63951428 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 299-471 |
| Cow position: | chr7:30302092-30302259 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 336-609 |
| Cow position: | chr7:62679588-62679323 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 142, 54 |
| Conread position: | 360-479 |
| Cow position: | chr7:68895184-68895300 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 435-638 |
| Cow position: | chr7:26851477-26851690 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 461-638 |
| Cow position: | chr7:30302432-30302613 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 65 |
Show alignments to all cow chromosomes.