Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-482 |
| Cow position: | chr8:17310945-17311429 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 304 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-482 |
| Cow position: | chr8:39196289-39195805 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 1-482 |
| Cow position: | chr8:49214356-49214838 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 1-557 |
| Cow position: | chr8:4686322-4686884 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 355 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 156, 36 |
| Conread position: | 1-557 |
| Cow position: | chr8:19050414-19050967 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-557 |
| Cow position: | chr8:47662399-47661834 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 376 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 1-578 |
| Cow position: | chr8:1318977-1319557 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 383 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 193, 22 |
| Conread position: | 1-578 |
| Cow position: | chr8:27578334-27578914 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 189, 46 |
| Conread position: | 1-599 |
| Cow position: | chr8:44244648-44244038 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 394 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 1-602 |
| Cow position: | chr8:50289223-50288620 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 407 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 1-622 |
| Cow position: | chr8:38390295-38390918 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 405 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 2-256 |
| Cow position: | chr8:39160249-39160490 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 248, 19 |
| Conread position: | 2-480 |
| Cow position: | chr8:47884955-47885442 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 2-482 |
| Cow position: | chr8:27983866-27983384 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 2-482 |
| Cow position: | chr8:47670386-47670871 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 2-578 |
| Cow position: | chr8:1154380-1153795 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 2-578 |
| Cow position: | chr8:9735176-9735759 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 3-482 |
| Cow position: | chr8:9540559-9540084 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 186, 19 |
| Conread position: | 3-571 |
| Cow position: | chr8:9274956-9275516 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 184, 34 |
| Conread position: | 3-575 |
| Cow position: | chr8:45448381-45448967 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 376 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 187, 32 |
| Conread position: | 5-482 |
| Cow position: | chr8:24916405-24915926 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 185, 17 |
| Conread position: | 6-247 |
| Cow position: | chr8:38579360-38579114 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 187, 56 |
| Conread position: | 6-577 |
| Cow position: | chr8:32930447-32931022 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 367 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 121, 39 |
| Conread position: | 8-578 |
| Cow position: | chr8:22572361-22571783 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 362 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 168, 27 |
| Conread position: | 9-577 |
| Cow position: | chr8:23770574-23771147 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 369 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 181, 28 |
| Conread position: | 11-599 |
| Cow position: | chr8:42483860-42484448 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 386 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 13-456 |
| Cow position: | chr8:53427267-53427706 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 178, 22 |
| Conread position: | 16-609 |
| Cow position: | chr8:9135949-9135359 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 22-482 |
| Cow position: | chr8:44693239-44693695 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 37-619 |
| Cow position: | chr8:15688189-15687604 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 42-536 |
| Cow position: | chr8:24876736-24876251 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 50-264 |
| Cow position: | chr8:44713333-44713112 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 50-465 |
| Cow position: | chr8:36637682-36637264 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-468 |
| Cow position: | chr8:8316653-8316245 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 137, 14 |
| Conread position: | 50-482 |
| Cow position: | chr8:47074244-47074679 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 50-571 |
| Cow position: | chr8:10748355-10748880 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 344 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 144, 28 |
| Conread position: | 50-571 |
| Cow position: | chr8:32632048-32631522 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-577 |
| Cow position: | chr8:36636567-36636032 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-578 |
| Cow position: | chr8:8518605-8518071 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 338 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 51-578 |
| Cow position: | chr8:45189069-45189595 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 52-482 |
| Cow position: | chr8:61035388-61034957 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 288 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 53-570 |
| Cow position: | chr8:46222347-46221828 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 55-275 |
| Cow position: | chr8:46945144-46944923 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 139, 18 |
| Conread position: | 55-577 |
| Cow position: | chr8:3784690-3785222 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 136, 19 |
| Conread position: | 71-576 |
| Cow position: | chr8:11055870-11056376 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 68 |
| Conread position: | 88-610 |
| Cow position: | chr8:24420515-24419991 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 196 |
| Conread position: | 102-579 |
| Cow position: | chr8:13808628-13809110 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 193-614 |
| Cow position: | chr8:47491697-47491285 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 57 |
| Conread position: | 225-623 |
| Cow position: | chr8:51327724-51328126 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 229-524 |
| Cow position: | chr8:16084260-16084528 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 299-497 |
| Cow position: | chr8:38578702-38578505 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 382-609 |
| Cow position: | chr8:19188148-19188384 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 514-623 |
| Cow position: | chr8:16084801-16084913 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.