Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10199F02.5 |
| Conread position: | 1-577 |
| Cow position: | chr9:3567274-3566688 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 377 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 1-577 |
| Cow position: | chr9:10321401-10321972 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 376 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 228, 36 |
| Conread position: | 1-599 |
| Cow position: | chr9:59174578-59173973 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 391 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 1-599 |
| Cow position: | chr9:59456020-59455411 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 376 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 175, 37 |
| Conread position: | 2-275 |
| Cow position: | chr9:59510186-59510470 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 2-477 |
| Cow position: | chr9:46626219-46625741 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 188, 33 |
| Conread position: | 2-482 |
| Cow position: | chr9:4672187-4672671 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 189, 33 |
| Conread position: | 2-571 |
| Cow position: | chr9:27933674-27934246 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 360 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 184, 33 |
| Conread position: | 2-571 |
| Cow position: | chr9:31194587-31194009 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 2-577 |
| Cow position: | chr9:37129957-37129381 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 373 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 2-578 |
| Cow position: | chr9:781217-780640 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 367 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 2-615 |
| Cow position: | chr9:64158705-64159324 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 36 |
| Conread position: | 3-578 |
| Cow position: | chr9:9012686-9013272 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 374 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 4-386 |
| Cow position: | chr9:3938203-3937833 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 112, 28 |
| Conread position: | 4-575 |
| Cow position: | chr9:35657554-35658106 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 28 |
| Conread position: | 8-584 |
| Cow position: | chr9:25483459-25484045 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 179, 27 |
| Conread position: | 9-466 |
| Cow position: | chr9:4984362-4984814 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 289 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 113, 26 |
| Conread position: | 9-571 |
| Cow position: | chr9:34243011-34242440 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 357 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 181, 26 |
| Conread position: | 9-571 |
| Cow position: | chr9:36724088-36724659 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 178, 26 |
| Conread position: | 9-578 |
| Cow position: | chr9:1076612-1076033 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 356 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 178, 26 |
| Conread position: | 9-584 |
| Cow position: | chr9:45872941-45873521 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 185, 26 |
| Conread position: | 10-578 |
| Cow position: | chr9:28677562-28678137 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 145, 25 |
| Conread position: | 16-598 |
| Cow position: | chr9:28626434-28625855 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 381 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 133, 29 |
| Conread position: | 23-578 |
| Cow position: | chr9:17064796-17064219 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 355 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 171, 12 |
| Conread position: | 35-187 |
| Cow position: | chr9:54994894-54995045 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 35-306 |
| Cow position: | chr9:11519187-11518919 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 151, 43 |
| Conread position: | 37-231 |
| Cow position: | chr9:3394689-3394498 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 150, 36 |
| Conread position: | 37-277 |
| Cow position: | chr9:18007172-18007416 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 37-365 |
| Cow position: | chr9:20310117-20309788 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 154, 41 |
| Conread position: | 37-571 |
| Cow position: | chr9:3024723-3025261 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 41 |
| Conread position: | 37-638 |
| Cow position: | chr9:3725893-3726508 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 36 |
| Conread position: | 50-368 |
| Cow position: | chr9:8969296-8968969 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 50-471 |
| Cow position: | chr9:3867877-3867463 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 28 |
| Conread position: | 50-482 |
| Cow position: | chr9:3155659-3156086 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 140, 27 |
| Conread position: | 50-482 |
| Cow position: | chr9:37163181-37162743 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 50-482 |
| Cow position: | chr9:37971580-37971148 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 50-482 |
| Cow position: | chr9:42309310-42309746 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-482 |
| Cow position: | chr9:59535726-59536158 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 50-513 |
| Cow position: | chr9:2052077-2052550 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 50-557 |
| Cow position: | chr9:60278395-60277879 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 158, 24 |
| Conread position: | 50-610 |
| Cow position: | chr9:64118456-64119017 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 365 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 51-584 |
| Cow position: | chr9:9055438-9054895 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 136, 23 |
| Conread position: | 52-485 |
| Cow position: | chr9:52570296-52570717 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 56-424 |
| Cow position: | chr9:23409847-23410210 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 57-637 |
| Cow position: | chr9:29327957-29328513 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 16 |
| Conread position: | 86-486 |
| Cow position: | chr9:59425360-59425745 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 91-571 |
| Cow position: | chr9:3542477-3542964 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 216 |
| Conread position: | 92-571 |
| Cow position: | chr9:6757241-6757722 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 130-577 |
| Cow position: | chr9:37064090-37063639 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 156 |
| Conread position: | 193-576 |
| Cow position: | chr9:3006468-3006083 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 257-615 |
| Cow position: | chr9:7012175-7012521 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 278-638 |
| Cow position: | chr9:3394115-3393765 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 299-623 |
| Cow position: | chr9:59510678-59511003 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 340-587 |
| Cow position: | chr9:37095120-37095367 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 49 |
| Conread position: | 407-616 |
| Cow position: | chr9:3937833-3937621 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 99, 168 |
Show alignments to all cow chromosomes.