Cow genome map

Conread name: Ss1.1-Ova1-OVRM10199F02.5

Conread position: 1-268
Cow position: chrX:29092989-29093262 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 181
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 49

Conread position: 1-482
Cow position: chrX:13413631-13413147 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 311
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 186, 36

Conread position: 1-482
Cow position: chrX:21222412-21222897 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 313
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 189, 36

Conread position: 1-482
Cow position: chrX:26504680-26505153 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 319
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 46

Conread position: 1-484
Cow position: chrX:24482002-24481521 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 323
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 44

Conread position: 1-571
Cow position: chrX:11465516-11464939 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 362
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 74

Conread position: 1-578
Cow position: chrX:21829016-21829595 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 379
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 190, 38

Conread position: 1-599
Cow position: chrX:1546419-1547028 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 391
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 189, 36

Conread position: 1-622
Cow position: chrX:29854079-29853460 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 395
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 189, 36

Conread position: 2-276
Cow position: chrX:30046629-30046352 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 172, 33

Conread position: 2-438
Cow position: chrX:30666453-30666014 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 278
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 185, 33

Conread position: 2-456
Cow position: chrX:8479191-8479644 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 285
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 188, 33

Conread position: 2-482
Cow position: chrX:24275157-24275639 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 326
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 26, 45

Conread position: 2-482
Cow position: chrX:26400981-26400498 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 304
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 192, 33

Conread position: 2-559
Cow position: chrX:7481092-7481654 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 349
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 192, 33

Conread position: 2-571
Cow position: chrX:8454241-8454815 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 359
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 189, 33

Conread position: 2-571
Cow position: chrX:9007829-9008401 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 351
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 188, 40

Conread position: 2-571
Cow position: chrX:16363637-16363061 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 362
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 199, 33

Conread position: 2-571
Cow position: chrX:23046631-23047207 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 359
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 185, 33

Conread position: 2-575
Cow position: chrX:18532496-18533056 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 379
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 188, 19

Conread position: 2-577
Cow position: chrX:21289999-21289421 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 383
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 188, 40

Conread position: 2-577
Cow position: chrX:21633091-21632519 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 390
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 180, 28

Conread position: 2-577
Cow position: chrX:22777801-22778382 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 2-577
Cow position: chrX:24122432-24121852 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 45

Conread position: 2-578
Cow position: chrX:8586580-8587165 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 364
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 192, 33

Conread position: 2-578
Cow position: chrX:20316568-20315985 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 364
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 91, 33

Conread position: 2-578
Cow position: chrX:22619824-22619238 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 382
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 43

Conread position: 2-609
Cow position: chrX:20796096-20796712 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 33

Conread position: 2-619
Cow position: chrX:17668795-17668191 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 33

Conread position: 2-636
Cow position: chrX:24136904-24136278 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 418
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 174, 19

Conread position: 3-482
Cow position: chrX:5395471-5394993 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 307
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 188, 42

Conread position: 3-482
Cow position: chrX:11668949-11668473 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 310
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 44

Conread position: 3-578
Cow position: chrX:2101348-2101929 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 376
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 188, 32

Conread position: 3-578
Cow position: chrX:13077200-13076627 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 383
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 184, 42

Conread position: 3-578
Cow position: chrX:24088894-24089472 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 357
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 191, 42

Conread position: 3-578
Cow position: chrX:27426825-27426250 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 365
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 191, 27

Conread position: 4-482
Cow position: chrX:15598413-15598899 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 313
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 40, 34

Conread position: 4-544
Cow position: chrX:19927808-19928327 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 30

Conread position: 4-578
Cow position: chrX:30174172-30173601 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 362
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 190, 31

Conread position: 5-482
Cow position: chrX:28634922-28634447 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 305
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 189, 43

Conread position: 6-578
Cow position: chrX:15179939-15179361 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 381
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 184, 29

Conread position: 7-571
Cow position: chrX:8670086-8670654 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 357
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 180, 28

Conread position: 7-578
Cow position: chrX:17614906-17614347 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 364
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 39, 24

Conread position: 8-482
Cow position: chrX:2860307-2859832 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 301
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 179, 27

Conread position: 8-482
Cow position: chrX:3085410-3084933 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 291
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 182, 27

Conread position: 8-497
Cow position: chrX:22893867-22893381 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 337
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 18, 43

Conread position: 8-571
Cow position: chrX:31187742-31187182 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 358
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 200, 27

Conread position: 8-578
Cow position: chrX:2603540-2604118 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 358
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 186, 27

Conread position: 8-584
Cow position: chrX:7029682-7030266 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 363
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 186, 27

Conread position: 9-578
Cow position: chrX:13097773-13097201 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 378
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 178, 26

Conread position: 9-578
Cow position: chrX:13398621-13398050 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 358
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 182, 24

Conread position: 10-578
Cow position: chrX:10532065-10531488 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 357
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 184, 25

Conread position: 11-575
Cow position: chrX:30142896-30142329 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 362
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 63

Conread position: 12-482
Cow position: chrX:30184392-30183925 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 301
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 178, 25

Conread position: 12-628
Cow position: chrX:28875910-28875304 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 14-519
Cow position: chrX:2787719-2787216 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 349
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 77

Conread position: 27-623
Cow position: chrX:29813221-29813805 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 21

Conread position: 37-578
Cow position: chrX:16275199-16275747 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 349
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 154, 37

Conread position: 37-609
Cow position: chrX:26428506-26427943 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 37

Conread position: 42-578
Cow position: chrX:7751423-7751970 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 349
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 148, 32

Conread position: 50-312
Cow position: chrX:41889367-41889097 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 19

Conread position: 50-368
Cow position: chrX:6276058-6275734 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 126, 28

Conread position: 50-482
Cow position: chrX:970298-970736 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 272
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 140, 24

Conread position: 50-482
Cow position: chrX:1833367-1833797 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 291
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 28

Conread position: 50-482
Cow position: chrX:6873537-6873102 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 283
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 144, 28

Conread position: 50-482
Cow position: chrX:21794632-21795064 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 287
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 140, 28

Conread position: 50-551
Cow position: chrX:12998028-12997536 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 338
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 143, 24

Conread position: 50-560
Cow position: chrX:12804327-12803812 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 332
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 63, 25

Conread position: 50-571
Cow position: chrX:2563325-2562794 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 340
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 137, 24

Conread position: 50-577
Cow position: chrX:6909802-6909276 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 347
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 126, 24

Conread position: 50-578
Cow position: chrX:18218929-18219467 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 336
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 137, 24

Conread position: 50-599
Cow position: chrX:26759058-26758512 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 350
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 282, 24

Conread position: 50-610
Cow position: chrX:20698744-20698194 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 366
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 65, 28

Conread position: 50-612
Cow position: chrX:6015922-6015358 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 23

Conread position: 52-578
Cow position: chrX:28759091-28758571 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 340
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 142, 22

Conread position: 58-465
Cow position: chrX:29873016-29872605 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 268
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 136, 16

Conread position: 58-577
Cow position: chrX:35017357-35017877 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 349
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 132, 20

Conread position: 58-609
Cow position: chrX:17632282-17631725 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 15

Conread position: 71-234
Cow position: chrX:19873008-19873162 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 83-544
Cow position: chrX:32430250-32430694 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 312
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 49

Conread position: 87-468
Cow position: chrX:19185380-19185013 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 259
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 103, 24

Conread position: 88-481
Cow position: chrX:2380352-2380739 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 210

Conread position: 89-269
Cow position: chrX:24139415-24139234 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 154

Conread position: 90-305
Cow position: chrX:10418599-10418369 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 97, 122

Conread position: 91-571
Cow position: chrX:5839914-5840395 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 8

Conread position: 106-623
Cow position: chrX:24114577-24114070 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 76

Conread position: 107-380
Cow position: chrX:37757363-37757644 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 32

Conread position: 114-449
Cow position: chrX:32468315-32468640 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 220
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 139

Conread position: 207-577
Cow position: chrX:26628336-26627964 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 242
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 91, 104

Conread position: 222-570
Cow position: chrX:35390383-35390036 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 231
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 94

Conread position: 295-608
Cow position: chrX:29783237-29782921 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 30, 8

Conread position: 298-572
Cow position: chrX:29757950-29758225 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 17

Conread position: 302-571
Cow position: chrX:30133044-30132772 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 15

Conread position: 307-482
Cow position: chrX:5834168-5833995 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 11

Conread position: 325-578
Cow position: chrX:24139213-24138960 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 11, 68

Conread position: 336-609
Cow position: chrX:10418124-10417853 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 422-609
Cow position: chrX:13417902-13417710 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 132

Show alignments to all cow chromosomes.