Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10204B04.5 |
| Conread position: | 384-562 |
| Cow position: | chr1:34750716-34750899 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 385-576 |
| Cow position: | chr1:54217263-54217063 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 169 |
| Conread position: | 386-570 |
| Cow position: | chr1:44747098-44746915 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 402-557 |
| Cow position: | chr1:57252399-57252248 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 409-576 |
| Cow position: | chr1:82076791-82076624 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 412-550 |
| Cow position: | chr1:4385563-4385424 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 414-576 |
| Cow position: | chr1:57119132-57119300 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 421-564 |
| Cow position: | chr1:63504543-63504391 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 422-576 |
| Cow position: | chr1:85141531-85141689 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 423-576 |
| Cow position: | chr1:88910701-88910855 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 425-576 |
| Cow position: | chr1:26531380-26531537 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 426-576 |
| Cow position: | chr1:38205673-38205520 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 427-571 |
| Cow position: | chr1:34921098-34920950 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 427-576 |
| Cow position: | chr1:78791108-78791258 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 428-555 |
| Cow position: | chr1:4945121-4945247 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 430-567 |
| Cow position: | chr1:19416680-19416823 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 430-567 |
| Cow position: | chr1:55181632-55181772 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 430-567 |
| Cow position: | chr1:55184976-55184836 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 432-576 |
| Cow position: | chr1:54288994-54289146 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 433-559 |
| Cow position: | chr1:3570117-3570248 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 435-575 |
| Cow position: | chr1:41735438-41735572 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 437-562 |
| Cow position: | chr1:7657129-7657253 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 437-571 |
| Cow position: | chr1:93110423-93110564 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 437-576 |
| Cow position: | chr1:83926577-83926433 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 440-556 |
| Cow position: | chr1:50307816-50307932 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-557 |
| Cow position: | chr1:52414777-52414898 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 440-570 |
| Cow position: | chr1:96346501-96346633 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 440-573 |
| Cow position: | chr1:51257201-51257068 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 440-574 |
| Cow position: | chr1:53920774-53920635 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 440-574 |
| Cow position: | chr1:62142301-62142435 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 112, 97 |
| Conread position: | 440-574 |
| Cow position: | chr1:67480239-67480108 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 440-576 |
| Cow position: | chr1:9958693-9958549 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 440-576 |
| Cow position: | chr1:26688285-26688425 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 125 |
| Conread position: | 440-576 |
| Cow position: | chr1:30442136-30442002 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 440-576 |
| Cow position: | chr1:31189929-31190064 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 440-576 |
| Cow position: | chr1:45925228-45925086 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 440-576 |
| Cow position: | chr1:46006022-46006159 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 440-576 |
| Cow position: | chr1:49346229-49346090 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 440-576 |
| Cow position: | chr1:70416315-70416176 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 77 |
| Conread position: | 440-576 |
| Cow position: | chr1:71782483-71782620 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 441-574 |
| Cow position: | chr1:72732222-72732089 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 112, 83 |
| Conread position: | 441-576 |
| Cow position: | chr1:18414284-18414420 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 441-576 |
| Cow position: | chr1:46205996-46205857 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 441-576 |
| Cow position: | chr1:64218243-64218384 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 441-576 |
| Cow position: | chr1:70533757-70533892 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-576 |
| Cow position: | chr1:71136336-71136199 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 442-558 |
| Cow position: | chr1:74301778-74301895 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 442-576 |
| Cow position: | chr1:64624644-64624781 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 442-576 |
| Cow position: | chr1:74946935-74947071 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 443-576 |
| Cow position: | chr1:80384579-80384717 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 445-570 |
| Cow position: | chr1:69415528-69415657 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 445-576 |
| Cow position: | chr1:90390198-90390336 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 445-576 |
| Cow position: | chr1:97622038-97622174 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 446-567 |
| Cow position: | chr1:96929210-96929089 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 447-576 |
| Cow position: | chr1:15902675-15902540 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 450-576 |
| Cow position: | chr1:43790026-43789901 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 458-569 |
| Cow position: | chr1:17171230-17171339 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 467-571 |
| Cow position: | chr1:33921125-33921229 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-571 |
| Cow position: | chr1:93031609-93031713 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-575 |
| Cow position: | chr1:23100056-23099950 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 64 |
| Conread position: | 467-576 |
| Cow position: | chr1:25793284-25793393 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 467-576 |
| Cow position: | chr1:50261773-50261881 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 467-576 |
| Cow position: | chr1:95764938-95765046 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 468-576 |
| Cow position: | chr1:80764381-80764489 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 469-576 |
| Cow position: | chr1:64189654-64189547 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 44 |
Show alignments to all cow chromosomes.