Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10204B04.5 |
| Conread position: | 394-576 |
| Cow position: | chr5:39134005-39134194 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 403-576 |
| Cow position: | chr5:42049923-42049750 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 405-576 |
| Cow position: | chr5:21194880-21195056 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 407-567 |
| Cow position: | chr5:55411801-55411966 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 417-576 |
| Cow position: | chr5:54090263-54090102 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 423-574 |
| Cow position: | chr5:28945837-28945992 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 426-576 |
| Cow position: | chr5:41605593-41605745 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 426-576 |
| Cow position: | chr5:58320247-58320404 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 427-576 |
| Cow position: | chr5:64399225-64399075 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 429-576 |
| Cow position: | chr5:41604842-41604690 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 430-576 |
| Cow position: | chr5:23529065-23529216 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 432-570 |
| Cow position: | chr5:39695867-39695724 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 436-576 |
| Cow position: | chr5:27411193-27411335 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 437-571 |
| Cow position: | chr5:23536385-23536251 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 437-571 |
| Cow position: | chr5:27293459-27293598 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 437-576 |
| Cow position: | chr5:18695366-18695226 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 437-576 |
| Cow position: | chr5:21530899-21531039 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 438-576 |
| Cow position: | chr5:47680807-47680951 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 439-576 |
| Cow position: | chr5:75687122-75687258 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 440-551 |
| Cow position: | chr5:32269948-32269837 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-556 |
| Cow position: | chr5:10450438-10450322 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-568 |
| Cow position: | chr5:36825522-36825395 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 440-570 |
| Cow position: | chr5:70387998-70387862 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 440-571 |
| Cow position: | chr5:45028916-45028780 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 440-575 |
| Cow position: | chr5:5929667-5929526 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:3059125-3058986 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:6987653-6987516 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 440-576 |
| Cow position: | chr5:17028303-17028161 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:23366560-23366698 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:33697346-33697482 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:34914349-34914486 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:36487487-36487629 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:39753449-39753588 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:42782521-42782658 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:51503200-51503070 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 440-576 |
| Cow position: | chr5:58344066-58343925 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 441-576 |
| Cow position: | chr5:39442503-39442364 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 78 |
| Conread position: | 446-576 |
| Cow position: | chr5:63328698-63328826 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 447-576 |
| Cow position: | chr5:51048815-51048686 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-576 |
| Cow position: | chr5:18554077-18553963 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 468-562 |
| Cow position: | chr5:7432984-7433080 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.