Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10215D10.5 |
| Conread position: | 2-262 |
| Cow position: | chr18:55073368-55073115 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 195, 156 |
| Conread position: | 254-572 |
| Cow position: | chr18:53587756-53587435 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 254-916 |
| Cow position: | chr18:54992108-54992771 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 127 |
| Conread position: | 254-923 |
| Cow position: | chr18:40250566-40251217 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 190 |
| Conread position: | 254-926 |
| Cow position: | chr18:56493219-56493889 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 428 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 68, 175 |
| Conread position: | 254-929 |
| Cow position: | chr18:55017164-55017844 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 434 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 254-930 |
| Cow position: | chr18:55007836-55008526 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 434 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 254-931 |
| Cow position: | chr18:54966325-54967001 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 71 |
| Conread position: | 254-931 |
| Cow position: | chr18:54978848-54979526 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 120 |
| Conread position: | 254-948 |
| Cow position: | chr18:55067582-55066875 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 266-926 |
| Cow position: | chr18:40074407-40075068 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 599-921 |
| Cow position: | chr18:53571683-53572018 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 599-924 |
| Cow position: | chr18:53559546-53559885 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 626-948 |
| Cow position: | chr18:55523207-55523543 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 710-948 |
| Cow position: | chr18:49032640-49032391 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 134, 120 |
| Conread position: | 710-948 |
| Cow position: | chr18:52012205-52011956 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 710-948 |
| Cow position: | chr18:53587013-53586764 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 716-924 |
| Cow position: | chr18:53526188-53526407 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 56 |
| Conread position: | 716-924 |
| Cow position: | chr18:53560086-53560305 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 716-925 |
| Cow position: | chr18:53586251-53586031 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 716-928 |
| Cow position: | chr18:40075183-40075406 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 716-930 |
| Cow position: | chr18:53586335-53586110 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 716-930 |
| Cow position: | chr18:53586503-53586278 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 716-939 |
| Cow position: | chr18:53586839-53586605 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 716-941 |
| Cow position: | chr18:41197651-41197887 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 59 |
| Conread position: | 716-948 |
| Cow position: | chr18:52448024-52448267 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 717-948 |
| Cow position: | chr18:42675244-42675002 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 718-941 |
| Cow position: | chr18:55523638-55523872 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 718-948 |
| Cow position: | chr18:33064524-33064283 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 718-948 |
| Cow position: | chr18:55066948-55066707 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 718-948 |
| Cow position: | chr18:56494174-56494415 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 735-948 |
| Cow position: | chr18:53586652-53586428 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 735-948 |
| Cow position: | chr18:56494023-56494247 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 736-926 |
| Cow position: | chr18:56329335-56329134 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 742-940 |
| Cow position: | chr18:53509508-53509717 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.