Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Ova1-OVRM10225B12.5
        

               Conread position:
               22-124
               

               Cow position:
               chr11:55119964-55119865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               86
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               32-124
               

               Cow position:
               chr11:82529351-82529257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               95
               

               Alignm identity:
               82
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               86-409
               

               Cow position:
               chr11:40479062-40478742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               73, 8
               

               Conread position:
               90-471
               

               Cow position:
               chr11:30210025-30209644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               236, 23
               

               Conread position:
               114-483
               

               Cow position:
               chr11:6245140-6245512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               217, 18
               

               Conread position:
               114-494
               

               Cow position:
               chr11:7460799-7460429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               24, 6
               

               Conread position:
               114-498
               

               Cow position:
               chr11:24438406-24438009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               267
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               147, 17
               

               Conread position:
               117-448
               

               Cow position:
               chr11:18244117-18243790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               234, 14
               

               Conread position:
               117-486
               

               Cow position:
               chr11:30720918-30721294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               249
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               50, 7
               

               Conread position:
               118-506
               

               Cow position:
               chr11:66572678-66572280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               130, 11
               

               Conread position:
               120-494
               

               Cow position:
               chr11:4663224-4662862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               8, 52
               

               Conread position:
               125-482
               

               Cow position:
               chr11:66041100-66041462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               119, 167
               

               Conread position:
               126-499
               

               Cow position:
               chr11:45619180-45619554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               38, 5
               

               Conread position:
               127-389
               

               Cow position:
               chr11:36799472-36799215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               210, 115
               

               Conread position:
               127-484
               

               Cow position:
               chr11:77750941-77750571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               181, 43
               

               Conread position:
               127-501
               

               Cow position:
               chr11:26144267-26143889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               128-311
               

               Cow position:
               chr11:30596819-30597003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               113, 6
               

               Conread position:
               129-437
               

               Cow position:
               chr11:32693639-32693340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               210, 84
               

               Conread position:
               129-502
               

               Cow position:
               chr11:63435350-63435729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               261
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               208, 41
               

               Conread position:
               131-240
               

               Cow position:
               chr11:35363332-35363441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               87
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               131-283
               

               Cow position:
               chr11:75748268-75748416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               110, 52
               

               Conread position:
               131-290
               

               Cow position:
               chr11:53511916-53512076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               39, 137
               

               Conread position:
               131-296
               

               Cow position:
               chr11:81614804-81614645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               40, 93
               

               Conread position:
               131-297
               

               Cow position:
               chr11:36301243-36301082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               39, 108
               

               Conread position:
               131-305
               

               Cow position:
               chr11:2514755-2514590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               131-306
               

               Cow position:
               chr11:15525788-15525972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               38, 84
               

               Conread position:
               131-306
               

               Cow position:
               chr11:36672213-36672039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               41, 112
               

               Conread position:
               131-307
               

               Cow position:
               chr11:17112797-17112626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 60
               

               Conread position:
               131-310
               

               Cow position:
               chr11:10076600-10076777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               42, 122
               

               Conread position:
               131-310
               

               Cow position:
               chr11:48042205-48042026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               46, 120
               

               Conread position:
               131-310
               

               Cow position:
               chr11:62979315-62979499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               37, 122
               

               Conread position:
               131-311
               

               Cow position:
               chr11:33468546-33468720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               131-311
               

               Cow position:
               chr11:48932750-48932577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               131-317
               

               Cow position:
               chr11:37347311-37347495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               57, 117
               

               Conread position:
               131-330
               

               Cow position:
               chr11:81174724-81174913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               131-335
               

               Cow position:
               chr11:23586472-23586672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               131-338
               

               Cow position:
               chr11:41176115-41175912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               131-339
               

               Cow position:
               chr11:5031940-5031738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               131-339
               

               Cow position:
               chr11:11232620-11232418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               129, 39
               

               Conread position:
               131-339
               

               Cow position:
               chr11:18341201-18341003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               171, 38
               

               Conread position:
               131-339
               

               Cow position:
               chr11:49231711-49231911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               182, 52
               

               Conread position:
               131-339
               

               Cow position:
               chr11:80788078-80787869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               37, 124
               

               Conread position:
               131-379
               

               Cow position:
               chr11:34962895-34963153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 42
               

               Conread position:
               131-379
               

               Cow position:
               chr11:56654382-56654639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               131-380
               

               Cow position:
               chr11:26483548-26483790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               131-382
               

               Cow position:
               chr11:43430616-43430370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               182, 37
               

               Conread position:
               131-382
               

               Cow position:
               chr11:62155459-62155724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               131-385
               

               Cow position:
               chr11:34032368-34032110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               210, 115
               

               Conread position:
               131-385
               

               Cow position:
               chr11:42044153-42043908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               210, 38
               

               Conread position:
               131-389
               

               Cow position:
               chr11:1362643-1362375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               131-389
               

               Cow position:
               chr11:23138227-23137961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               39, 102
               

               Conread position:
               131-393
               

               Cow position:
               chr11:63482592-63482332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               199, 127
               

               Conread position:
               131-396
               

               Cow position:
               chr11:60143464-60143204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               123, 16
               

               Conread position:
               131-399
               

               Cow position:
               chr11:1157479-1157746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               82, 114
               

               Conread position:
               131-400
               

               Cow position:
               chr11:377811-377537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               36, 116
               

               Conread position:
               131-408
               

               Cow position:
               chr11:61958912-61958635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               208
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 94
               

               Conread position:
               131-409
               

               Cow position:
               chr11:7590028-7590301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               66, 31
               

               Conread position:
               131-409
               

               Cow position:
               chr11:17831384-17831110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               39, 52
               

               Conread position:
               131-409
               

               Cow position:
               chr11:23385411-23385130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               71, 95
               

               Conread position:
               131-416
               

               Cow position:
               chr11:36848761-36849035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               210, 107
               

               Conread position:
               131-422
               

               Cow position:
               chr11:34113100-34113392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               177, 35
               

               Conread position:
               131-423
               

               Cow position:
               chr11:70086159-70086459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               31, 193
               

               Conread position:
               131-426
               

               Cow position:
               chr11:33414071-33414372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               131-437
               

               Cow position:
               chr11:36112256-36112563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               30, 59
               

               Conread position:
               131-437
               

               Cow position:
               chr11:59902725-59903037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               126, 111
               

               Conread position:
               131-444
               

               Cow position:
               chr11:49934906-49934591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               15, 266
               

               Conread position:
               131-447
               

               Cow position:
               chr11:87155352-87155676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               39, 98
               

               Conread position:
               131-453
               

               Cow position:
               chr11:8545178-8544855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               185, 52
               

               Conread position:
               131-453
               

               Cow position:
               chr11:38670517-38670851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               210, 107
               

               Conread position:
               131-461
               

               Cow position:
               chr11:34145079-34144750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               109, 37
               

               Conread position:
               131-464
               

               Cow position:
               chr11:48474537-48474881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               182, 119
               

               Conread position:
               131-464
               

               Cow position:
               chr11:71868774-71868433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               39, 111
               

               Conread position:
               131-467
               

               Cow position:
               chr11:13043311-13042973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 62
               

               Conread position:
               131-469
               

               Cow position:
               chr11:17227811-17227474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               113, 39
               

               Conread position:
               131-470
               

               Cow position:
               chr11:8988393-8988052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               80, 37
               

               Conread position:
               131-470
               

               Cow position:
               chr11:67804586-67804915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               78, 101
               

               Conread position:
               131-471
               

               Cow position:
               chr11:11125497-11125844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               182, 39
               

               Conread position:
               131-471
               

               Cow position:
               chr11:30639111-30638773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               39, 99
               

               Conread position:
               131-472
               

               Cow position:
               chr11:19247361-19247025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               244
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               39, 24
               

               Conread position:
               131-474
               

               Cow position:
               chr11:45872485-45872127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               36, 134
               

               Conread position:
               131-475
               

               Cow position:
               chr11:23251766-23251416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               38, 115
               

               Conread position:
               131-475
               

               Cow position:
               chr11:79728835-79728489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               159, 115
               

               Conread position:
               131-475
               

               Cow position:
               chr11:82940787-82940447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               251
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               130, 58
               

               Conread position:
               131-481
               

               Cow position:
               chr11:57724991-57724634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               36, 136
               

               Conread position:
               131-482
               

               Cow position:
               chr11:9463666-9464027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               36, 117
               

               Conread position:
               131-482
               

               Cow position:
               chr11:66188486-66188131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               130, 39
               

               Conread position:
               131-484
               

               Cow position:
               chr11:10095181-10095535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               182, 52
               

               Conread position:
               131-484
               

               Cow position:
               chr11:48649814-48650178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               16, 41
               

               Conread position:
               131-485
               

               Cow position:
               chr11:15632722-15632367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 39
               

               Conread position:
               131-485
               

               Cow position:
               chr11:31525701-31526073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               131-485
               

               Cow position:
               chr11:63469714-63470051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               245
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               124, 25
               

               Conread position:
               131-485
               

               Cow position:
               chr11:64029423-64029073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               217, 62
               

               Conread position:
               131-486
               

               Cow position:
               chr11:3920471-3920107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               34, 110
               

               Conread position:
               131-486
               

               Cow position:
               chr11:46748029-46747665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               210, 40
               

               Conread position:
               131-486
               

               Cow position:
               chr11:66733673-66734025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               35, 23
               

               Conread position:
               131-490
               

               Cow position:
               chr11:25620562-25620191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               182, 60
               

               Conread position:
               131-491
               

               Cow position:
               chr11:38334352-38334721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               31, 90
               

               Conread position:
               131-491
               

               Cow position:
               chr11:65607856-65607497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               167, 39
               

               Conread position:
               131-491
               

               Cow position:
               chr11:70484024-70483652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               141, 30
               

               Conread position:
               131-493
               

               Cow position:
               chr11:13592571-13592940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               258
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               41, 62
               

               Conread position:
               131-495
               

               Cow position:
               chr11:3726120-3726493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               36, 117
               

               Conread position:
               131-495
               

               Cow position:
               chr11:7924752-7924402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 65
               

               Conread position:
               131-495
               

               Cow position:
               chr11:56728784-56729137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               131-496
               

               Cow position:
               chr11:5075388-5075026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               36, 87
               

               Conread position:
               131-496
               

               Cow position:
               chr11:19592160-19591793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               259
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               30, 110
               

               Conread position:
               131-496
               

               Cow position:
               chr11:34616102-34616464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               36, 87
               

               Conread position:
               131-496
               

               Cow position:
               chr11:55333746-55334119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               206, 39
               

               Conread position:
               131-496
               

               Cow position:
               chr11:59463802-59463436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               220, 61
               

               Conread position:
               131-498
               

               Cow position:
               chr11:42016801-42016428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               261
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               31, 119
               

               Conread position:
               131-499
               

               Cow position:
               chr11:53773510-53773888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 369
               

               Conread position:
               131-501
               

               Cow position:
               chr11:33349864-33349493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               36, 98
               

               Conread position:
               131-502
               

               Cow position:
               chr11:1380516-1380888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               257
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               33, 25
               

               Conread position:
               131-502
               

               Cow position:
               chr11:13191057-13191450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               131-502
               

               Cow position:
               chr11:30165344-30165722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               36, 109
               

               Conread position:
               131-504
               

               Cow position:
               chr11:15772885-15772503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 122
               

               Conread position:
               131-506
               

               Cow position:
               chr11:5485844-5486230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               160, 115
               

               Conread position:
               131-506
               

               Cow position:
               chr11:77758923-77758542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               274
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               31, 25
               

               Conread position:
               131-511
               

               Cow position:
               chr11:85723534-85723909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               39, 116
               

               Conread position:
               131-517
               

               Cow position:
               chr11:42919393-42918993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               36, 63
               

               Conread position:
               131-517
               

               Cow position:
               chr11:77745421-77745020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               277
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               39, 15
               

               Conread position:
               131-521
               

               Cow position:
               chr11:84385803-84385409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               273
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               47, 116
               

               Conread position:
               132-263
               

               Cow position:
               chr11:29266376-29266506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               132-283
               

               Cow position:
               chr11:9837266-9837116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               39, 120
               

               Conread position:
               132-295
               

               Cow position:
               chr11:33364180-33364336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               132-310
               

               Cow position:
               chr11:53130646-53130822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               132-339
               

               Cow position:
               chr11:2811893-2811692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               132-409
               

               Cow position:
               chr11:16907207-16906936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               176, 36
               

               Conread position:
               132-416
               

               Cow position:
               chr11:33310805-33311095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               37, 94
               

               Conread position:
               132-452
               

               Cow position:
               chr11:39499194-39499515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               128, 38
               

               Conread position:
               132-460
               

               Cow position:
               chr11:81406323-81405999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               70, 39
               

               Conread position:
               132-471
               

               Cow position:
               chr11:51729124-51729453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               181, 38
               

               Conread position:
               132-475
               

               Cow position:
               chr11:2917750-2917410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               209, 38
               

               Conread position:
               132-475
               

               Cow position:
               chr11:45282763-45283110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               32, 85
               

               Conread position:
               132-485
               

               Cow position:
               chr11:6400234-6399872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               171, 12
               

               Conread position:
               132-494
               

               Cow position:
               chr11:13499848-13500210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               18, 101
               

               Conread position:
               132-512
               

               Cow position:
               chr11:33348350-33347979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               266
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 110
               

               Conread position:
               133-256
               

               Cow position:
               chr11:18509182-18509057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               133-297
               

               Cow position:
               chr11:8105618-8105781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               108, 94
               

               Conread position:
               133-297
               

               Cow position:
               chr11:62808813-62808656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               133-297
               

               Cow position:
               chr11:71455627-71455788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               20, 115
               

               Conread position:
               133-303
               

               Cow position:
               chr11:70609622-70609790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               133-322
               

               Cow position:
               chr11:16251410-16251223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               133-331
               

               Cow position:
               chr11:42793136-42792943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               133-339
               

               Cow position:
               chr11:30954835-30955038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               133-343
               

               Cow position:
               chr11:67747121-67747326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               133-379
               

               Cow position:
               chr11:44642450-44642208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               105, 37
               

               Conread position:
               133-390
               

               Cow position:
               chr11:47544967-47545224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               123, 42
               

               Conread position:
               133-405
               

               Cow position:
               chr11:45898216-45897940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               162, 37
               

               Conread position:
               133-409
               

               Cow position:
               chr11:48272034-48272313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               208, 37
               

               Conread position:
               133-409
               

               Cow position:
               chr11:73924723-73924446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               122, 29
               

               Conread position:
               133-409
               

               Cow position:
               chr11:80530202-80530473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               31, 130
               

               Conread position:
               133-410
               

               Cow position:
               chr11:30924986-30925268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               120, 59
               

               Conread position:
               133-430
               

               Cow position:
               chr11:40573497-40573200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               19, 38
               

               Conread position:
               133-438
               

               Cow position:
               chr11:38874567-38874270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               204, 118
               

               Conread position:
               133-439
               

               Cow position:
               chr11:3393372-3393067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               108, 16
               

               Conread position:
               133-455
               

               Cow position:
               chr11:11558004-11558335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               208, 38
               

               Conread position:
               133-463
               

               Cow position:
               chr11:36981401-36981736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               34, 90
               

               Conread position:
               133-463
               

               Cow position:
               chr11:77319249-77319583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               208, 35
               

               Conread position:
               133-471
               

               Cow position:
               chr11:50152979-50152634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               240
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               208, 37
               

               Conread position:
               133-474
               

               Cow position:
               chr11:81135325-81134987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               223
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               208, 18
               

               Conread position:
               133-475
               

               Cow position:
               chr11:20761683-20762035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               239, 37
               

               Conread position:
               133-475
               

               Cow position:
               chr11:43360951-43360603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               32, 173
               

               Conread position:
               133-475
               

               Cow position:
               chr11:44031839-44032189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               114, 28
               

               Conread position:
               133-475
               

               Cow position:
               chr11:47899116-47899433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               133-475
               

               Cow position:
               chr11:53778451-53778803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 117
               

               Conread position:
               133-475
               

               Cow position:
               chr11:65157575-65157222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               49, 37
               

               Conread position:
               133-475
               

               Cow position:
               chr11:65762763-65762402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               147, 40
               

               Conread position:
               133-475
               

               Cow position:
               chr11:67600619-67600961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               207, 37
               

               Conread position:
               133-475
               

               Cow position:
               chr11:74316549-74316889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               208, 37
               

               Conread position:
               133-478
               

               Cow position:
               chr11:8525274-8524932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               195, 37
               

               Conread position:
               133-483
               

               Cow position:
               chr11:20684740-20684379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               238
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               29, 115
               

               Conread position:
               133-485
               

               Cow position:
               chr11:35153988-35153627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               208, 37
               

               Conread position:
               133-485
               

               Cow position:
               chr11:77546254-77546590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               204, 61
               

               Conread position:
               133-486
               

               Cow position:
               chr11:41020-41364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               116, 40
               

               Conread position:
               133-486
               

               Cow position:
               chr11:27746761-27747112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               84, 37
               

               Conread position:
               133-486
               

               Cow position:
               chr11:29960142-29960486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               190, 38
               

               Conread position:
               133-486
               

               Cow position:
               chr11:71493021-71492670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               18, 95
               

               Conread position:
               133-488
               

               Cow position:
               chr11:52297384-52297024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               208, 37
               

               Conread position:
               133-489
               

               Cow position:
               chr11:83043527-83043170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               208, 37
               

               Conread position:
               133-491
               

               Cow position:
               chr11:2925451-2925107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               350, 37
               

               Conread position:
               133-491
               

               Cow position:
               chr11:48295869-48296227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 37
               

               Conread position:
               133-494
               

               Cow position:
               chr11:34646428-34646797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               208, 58
               

               Conread position:
               133-494
               

               Cow position:
               chr11:76889885-76890244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               204, 94
               

               Conread position:
               133-495
               

               Cow position:
               chr11:62239583-62239944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               181, 37
               

               Conread position:
               133-496
               

               Cow position:
               chr11:2907682-2907327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               96, 37
               

               Conread position:
               133-497
               

               Cow position:
               chr11:75874915-75874568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               133-497
               

               Cow position:
               chr11:80556057-80556424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               107, 40
               

               Conread position:
               133-498
               

               Cow position:
               chr11:2083973-2084351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 119
               

               Conread position:
               133-501
               

               Cow position:
               chr11:27405229-27404862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               208, 40
               

               Conread position:
               133-501
               

               Cow position:
               chr11:83357230-83357606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               30, 56
               

               Conread position:
               133-506
               

               Cow position:
               chr11:80923487-80923112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 37
               

               Conread position:
               133-516
               

               Cow position:
               chr11:33287116-33286729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 61
               

               Conread position:
               133-522
               

               Cow position:
               chr11:1625381-1624993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               207, 37
               

               Conread position:
               134-242
               

               Cow position:
               chr11:29786768-29786660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               134-283
               

               Cow position:
               chr11:43914049-43914197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               28, 113
               

               Conread position:
               134-314
               

               Cow position:
               chr11:64638696-64638512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               30, 121
               

               Conread position:
               134-338
               

               Cow position:
               chr11:27386508-27386302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               134-339
               

               Cow position:
               chr11:30120828-30120624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               106, 37
               

               Conread position:
               134-364
               

               Cow position:
               chr11:70273138-70273374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 121
               

               Conread position:
               134-379
               

               Cow position:
               chr11:77128497-77128744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               118, 35
               

               Conread position:
               134-382
               

               Cow position:
               chr11:34829942-34829700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               199, 20
               

               Conread position:
               134-389
               

               Cow position:
               chr11:23128704-23128447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               207, 5
               

               Conread position:
               134-389
               

               Cow position:
               chr11:29947090-29946821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               82, 18
               

               Conread position:
               134-403
               

               Cow position:
               chr11:44636920-44636646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               139, 36
               

               Conread position:
               134-409
               

               Cow position:
               chr11:35684657-35684385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               36, 41
               

               Conread position:
               134-445
               

               Cow position:
               chr11:34121038-34121351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               207, 37
               

               Conread position:
               134-456
               

               Cow position:
               chr11:83066332-83066656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               177, 34
               

               Conread position:
               134-471
               

               Cow position:
               chr11:18698715-18699049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               179, 36
               

               Conread position:
               134-471
               

               Cow position:
               chr11:21728431-21728110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               173, 36
               

               Conread position:
               134-472
               

               Cow position:
               chr11:259335-258993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               207, 36
               

               Conread position:
               134-475
               

               Cow position:
               chr11:6234042-6233695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               179, 41
               

               Conread position:
               134-475
               

               Cow position:
               chr11:20238509-20238859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               240
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               118, 37
               

               Conread position:
               134-475
               

               Cow position:
               chr11:26117889-26117556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               33, 120
               

               Conread position:
               134-475
               

               Cow position:
               chr11:36286534-36286887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               179, 6
               

               Conread position:
               134-475
               

               Cow position:
               chr11:41215579-41215916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               207, 112
               

               Conread position:
               134-475
               

               Cow position:
               chr11:42358957-42359276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               134-475
               

               Cow position:
               chr11:68905236-68904905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               179, 36
               

               Conread position:
               134-475
               

               Cow position:
               chr11:68912972-68913326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               252
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               28, 111
               

               Conread position:
               134-482
               

               Cow position:
               chr11:9270890-9270548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               33, 113
               

               Conread position:
               134-486
               

               Cow position:
               chr11:42083315-42083647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               242, 55
               

               Conread position:
               134-486
               

               Cow position:
               chr11:64044079-64044411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               134-495
               

               Cow position:
               chr11:62490271-62490622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               240
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               98, 36
               

               Conread position:
               134-496
               

               Cow position:
               chr11:62620221-62620579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               207, 41
               

               Conread position:
               134-496
               

               Cow position:
               chr11:80756946-80756587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               36, 105
               

               Conread position:
               134-510
               

               Cow position:
               chr11:30708336-30708721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               33, 118
               

               Conread position:
               134-516
               

               Cow position:
               chr11:69844206-69844584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               207, 104
               

               Conread position:
               135-455
               

               Cow position:
               chr11:4674609-4674281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               76, 109
               

               Conread position:
               135-467
               

               Cow position:
               chr11:77705599-77705925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               209, 29
               

               Conread position:
               135-469
               

               Cow position:
               chr11:55761718-55762033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               178, 33
               

               Conread position:
               135-471
               

               Cow position:
               chr11:22932136-22931818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               25, 58
               

               Conread position:
               135-475
               

               Cow position:
               chr11:35580096-35580444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               144, 38
               

               Conread position:
               135-475
               

               Cow position:
               chr11:37804716-37804369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               241
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               206, 64
               

               Conread position:
               135-475
               

               Cow position:
               chr11:41986206-41985865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               241
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               35, 59
               

               Conread position:
               135-476
               

               Cow position:
               chr11:30830777-30830439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 42
               

               Conread position:
               135-492
               

               Cow position:
               chr11:61203004-61203371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               31, 53
               

               Conread position:
               135-493
               

               Cow position:
               chr11:45646756-45646387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               249
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               196, 40
               

               Conread position:
               135-494
               

               Cow position:
               chr11:14649475-14649109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               27, 10
               

               Conread position:
               135-494
               

               Cow position:
               chr11:17889888-17889528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               39, 90
               

               Conread position:
               135-494
               

               Cow position:
               chr11:36940762-36940392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               246
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               31, 111
               

               Conread position:
               135-494
               

               Cow position:
               chr11:42291994-42291641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               206, 44
               

               Conread position:
               135-495
               

               Cow position:
               chr11:7873986-7874344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               206, 53
               

               Conread position:
               135-496
               

               Cow position:
               chr11:36194132-36194497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               28, 90
               

               Conread position:
               135-553
               

               Cow position:
               chr11:83397738-83398170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               276
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               29, 122
               

               Conread position:
               136-404
               

               Cow position:
               chr11:36658978-36658714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               199, 30
               

               Conread position:
               136-406
               

               Cow position:
               chr11:23232674-23232412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               96, 9
               

               Conread position:
               136-412
               

               Cow position:
               chr11:65409315-65409043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               203, 35
               

               Conread position:
               136-430
               

               Cow position:
               chr11:59872771-59873061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               211, 34
               

               Conread position:
               136-437
               

               Cow position:
               chr11:20602067-20602363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               136-471
               

               Cow position:
               chr11:48544276-48544615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               136-471
               

               Cow position:
               chr11:49148876-49149225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               28, 89
               

               Conread position:
               136-475
               

               Cow position:
               chr11:68910011-68909671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               248
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               123, 78
               

               Conread position:
               136-483
               

               Cow position:
               chr11:38236083-38236436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               87, 32
               

               Conread position:
               136-490
               

               Cow position:
               chr11:75480189-75479824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               255
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               89, 190
               

               Conread position:
               136-491
               

               Cow position:
               chr11:29916372-29916747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 52
               

               Conread position:
               136-502
               

               Cow position:
               chr11:25791852-25791483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               34, 81
               

               Conread position:
               136-507
               

               Cow position:
               chr11:45434926-45435290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               163, 34
               

               Conread position:
               136-515
               

               Cow position:
               chr11:52381034-52380647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               205, 34
               

               Conread position:
               137-430
               

               Cow position:
               chr11:71501295-71501000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 108
               

               Conread position:
               137-471
               

               Cow position:
               chr11:21844292-21843960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               198, 33
               

               Conread position:
               137-483
               

               Cow position:
               chr11:70382852-70382498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               137-495
               

               Cow position:
               chr11:55052727-55053062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               204, 33
               

               Conread position:
               137-506
               

               Cow position:
               chr11:71390723-71390358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               335, 36
               

               Conread position:
               138-339
               

               Cow position:
               chr11:14094581-14094382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               103, 35
               

               Conread position:
               138-471
               

               Cow position:
               chr11:6202288-6202635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               201, 32
               

               Conread position:
               138-491
               

               Cow position:
               chr11:13061388-13061058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               139-333
               

               Cow position:
               chr11:21428151-21427961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               139-409
               

               Cow position:
               chr11:63847692-63847959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               198, 33
               

               Conread position:
               139-413
               

               Cow position:
               chr11:39118591-39118874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               10, 115
               

               Conread position:
               139-458
               

               Cow position:
               chr11:81162590-81162281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               139-463
               

               Cow position:
               chr11:28993889-28993577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               202, 31
               

               Conread position:
               139-492
               

               Cow position:
               chr11:78381212-78380868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               63, 50
               

               Conread position:
               139-493
               

               Cow position:
               chr11:48383369-48383730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               28, 101
               

               Conread position:
               139-494
               

               Cow position:
               chr11:67345807-67345457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               139-496
               

               Cow position:
               chr11:55744318-55744672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               140-471
               

               Cow position:
               chr11:44222734-44223060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               112, 30
               

               Conread position:
               140-471
               

               Cow position:
               chr11:49152795-49153119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               201, 53
               

               Conread position:
               140-490
               

               Cow position:
               chr11:2874232-2874599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               23, 107
               

               Conread position:
               140-492
               

               Cow position:
               chr11:32126454-32126816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               146, 65
               

               Conread position:
               141-475
               

               Cow position:
               chr11:42884933-42884602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               194, 72
               

               Conread position:
               141-497
               

               Cow position:
               chr11:41549491-41549136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               71, 18
               

               Conread position:
               144-475
               

               Cow position:
               chr11:47639182-47638841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               192, 92
               

               Conread position:
               144-484
               

               Cow position:
               chr11:18851766-18852090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               197, 26
               

               Conread position:
               145-485
               

               Cow position:
               chr11:32055336-32054992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               32, 121
               

               Conread position:
               147-312
               

               Cow position:
               chr11:65435704-65435865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               147-371
               

               Cow position:
               chr11:52983527-52983750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               20, 42
               

               Conread position:
               147-475
               

               Cow position:
               chr11:79960938-79960620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               190, 95
               

               Conread position:
               147-475
               

               Cow position:
               chr11:84228863-84228540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               25, 57
               

               Conread position:
               147-491
               

               Cow position:
               chr11:41134215-41133879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               253, 103
               

               Conread position:
               147-497
               

               Cow position:
               chr11:45742232-45742572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               194, 46
               

               Conread position:
               148-389
               

               Cow position:
               chr11:67246644-67246878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               148-471
               

               Cow position:
               chr11:68112411-68112080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               144, 25
               

               Conread position:
               148-496
               

               Cow position:
               chr11:32254367-32254011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               253
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               14, 46
               

               Conread position:
               149-455
               

               Cow position:
               chr11:85703558-85703852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               234, 99
               

               Conread position:
               149-475
               

               Cow position:
               chr11:4732192-4732527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               15, 102
               

               Conread position:
               150-484
               

               Cow position:
               chr11:49057256-49057575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               222, 20
               

               Conread position:
               154-471
               

               Cow position:
               chr11:21422078-21421759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               187, 88
               

               Conread position:
               156-471
               

               Cow position:
               chr11:63999230-63998911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               185, 22
               

               Conread position:
               157-475
               

               Cow position:
               chr11:42066721-42067047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               139, 18
               

               Conread position:
               157-475
               

               Cow position:
               chr11:67615382-67615069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               157, 13
               

               Conread position:
               157-518
               

               Cow position:
               chr11:40395298-40395662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               254
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               130, 56
               

               Conread position:
               158-475
               

               Cow position:
               chr11:72442974-72443297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               99, 46
               

               Conread position:
               158-486
               

               Cow position:
               chr11:48659793-48660124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               183, 12
               

               Conread position:
               158-496
               

               Cow position:
               chr11:70206184-70206519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               155, 37
               

               Conread position:
               158-515
               

               Cow position:
               chr11:52690661-52690305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               155, 84
               

               Conread position:
               161-444
               

               Cow position:
               chr11:80537350-80537624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               161-454
               

               Cow position:
               chr11:63202383-63202085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               170, 32
               

               Conread position:
               161-480
               

               Cow position:
               chr11:27907658-27907958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               180, 10
               

               Conread position:
               161-486
               

               Cow position:
               chr11:76652886-76653218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               180, 25
               

               Conread position:
               161-493
               

               Cow position:
               chr11:59024490-59024153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               181, 76
               

               Conread position:
               161-495
               

               Cow position:
               chr11:13864234-13863897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               180, 40
               

               Conread position:
               161-496
               

               Cow position:
               chr11:48672578-48672917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               113, 20
               

               Conread position:
               161-496
               

               Cow position:
               chr11:70756345-70756675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               145, 63
               

               Conread position:
               162-484
               

               Cow position:
               chr11:62788993-62789321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               179, 81
               

               Conread position:
               163-497
               

               Cow position:
               chr11:69977843-69978170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               151, 40
               

               Conread position:
               164-337
               

               Cow position:
               chr11:71807704-71807535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               131, 93
               

               Conread position:
               164-470
               

               Cow position:
               chr11:40608730-40608415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               177, 94
               

               Conread position:
               164-485
               

               Cow position:
               chr11:50472182-50472511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               33, 78
               

               Conread position:
               164-514
               

               Cow position:
               chr11:62742766-62742428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               149, 25
               

               Conread position:
               165-485
               

               Cow position:
               chr11:67615061-67614732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               82, 97
               

               Conread position:
               169-475
               

               Cow position:
               chr11:49873016-49872704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               27, 82
               

               Conread position:
               174-469
               

               Cow position:
               chr11:17036653-17036355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               165, 82
               

               Conread position:
               175-413
               

               Cow position:
               chr11:33345321-33345566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               138, 82
               

               Conread position:
               175-480
               

               Cow position:
               chr11:81168154-81167843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               67, 72
               

               Conread position:
               175-484
               

               Cow position:
               chr11:27719445-27719147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               47, 74
               

               Conread position:
               176-475
               

               Cow position:
               chr11:29308461-29308765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               95, 16
               

               Conread position:
               176-498
               

               Cow position:
               chr11:35536462-35536781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               9, 78
               

               Conread position:
               176-502
               

               Cow position:
               chr11:63920170-63919861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               217
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               165, 48
               

               Conread position:
               182-444
               

               Cow position:
               chr11:31411000-31410728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               185-512
               

               Cow position:
               chr11:48085803-48086135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               57, 76
               

               Conread position:
               190-475
               

               Cow position:
               chr11:83032574-83032860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               67, 52
               

               Conread position:
               192-471
               

               Cow position:
               chr11:80413117-80412830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               124, 35
               

               Conread position:
               193-462
               

               Cow position:
               chr11:47772497-47772212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               148, 65
               

               Conread position:
               195-456
               

               Cow position:
               chr11:31874990-31875258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               146, 31
               

               Conread position:
               195-486
               

               Cow position:
               chr11:8584218-8584509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 173
               

               Conread position:
               195-496
               

               Cow position:
               chr11:16314770-16315078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               142, 47
               

               Conread position:
               196-496
               

               Cow position:
               chr11:39060702-39060397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               21, 50
               

               Conread position:
               197-489
               

               Cow position:
               chr11:53510604-53510299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               28, 65
               

               Conread position:
               198-494
               

               Cow position:
               chr11:53816759-53817057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               139, 32
               

               Conread position:
               201-471
               

               Cow position:
               chr11:42160157-42159883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               39, 245
               

               Conread position:
               201-483
               

               Cow position:
               chr11:17676467-17676184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               140, 45
               

               Conread position:
               201-521
               

               Cow position:
               chr11:30370011-30370323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               130, 59
               

               Conread position:
               202-471
               

               Cow position:
               chr11:62813045-62812773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               203-470
               

               Cow position:
               chr11:80564198-80564475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               139, 44
               

               Conread position:
               205-471
               

               Cow position:
               chr11:24599482-24599220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               136, 43
               

               Conread position:
               208-483
               

               Cow position:
               chr11:6642719-6643005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               52, 38
               

               Conread position:
               208-492
               

               Cow position:
               chr11:1067532-1067239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               133, 50
               

               Conread position:
               209-461
               

               Cow position:
               chr11:35926995-35926740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               132, 39
               

               Conread position:
               211-483
               

               Cow position:
               chr11:72870814-72871087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               126, 84
               

               Conread position:
               216-475
               

               Cow position:
               chr11:84890802-84890544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               123, 179
               

               Conread position:
               216-487
               

               Cow position:
               chr11:47724821-47725083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               123, 24
               

               Conread position:
               219-475
               

               Cow position:
               chr11:17721883-17721617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               122, 39
               

               Conread position:
               221-469
               

               Cow position:
               chr11:4637250-4636998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               120, 39
               

               Conread position:
               221-495
               

               Cow position:
               chr11:55636307-55636022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               229-492
               

               Cow position:
               chr11:57503413-57503679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               170, 18
               

               Conread position:
               229-493
               

               Cow position:
               chr11:29677129-29677408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               230-471
               

               Cow position:
               chr11:7559930-7560180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               107, 35
               

               Conread position:
               232-474
               

               Cow position:
               chr11:18910944-18910701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               87, 14
               

               Conread position:
               237-483
               

               Cow position:
               chr11:3714760-3715013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               19, 64
               

               Conread position:
               243-517
               

               Cow position:
               chr11:62889953-62889670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               17, 248
               

               Conread position:
               246-518
               

               Cow position:
               chr11:63866714-63866432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               91, 49
               

               Conread position:
               248-485
               

               Cow position:
               chr11:46922939-46922694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               248-492
               

               Cow position:
               chr11:62663284-62663042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               93, 11
               

               Conread position:
               251-474
               

               Cow position:
               chr11:30867133-30867359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               90, 146
               

               Conread position:
               251-475
               

               Cow position:
               chr11:35670001-35669783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               90, 8
               

               Conread position:
               251-495
               

               Cow position:
               chr11:68883668-68883922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               62, 68
               

               Conread position:
               253-475
               

               Cow position:
               chr11:21885785-21886013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               88, 203
               

               Conread position:
               254-475
               

               Cow position:
               chr11:20205897-20205675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               87, 9
               

               Conread position:
               254-496
               

               Cow position:
               chr11:25119977-25119735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               87, 5
               

               Conread position:
               255-472
               

               Cow position:
               chr11:29786544-29786313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 9
               

               Conread position:
               255-520
               

               Cow position:
               chr11:30172263-30172529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               76, 58
               

               Conread position:
               256-506
               

               Cow position:
               chr11:28078458-28078705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               229, 45
               

               Conread position:
               258-472
               

               Cow position:
               chr11:38211602-38211821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 202
               

               Conread position:
               258-476
               

               Cow position:
               chr11:18447535-18447317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               83, 138
               

               Conread position:
               258-491
               

               Cow position:
               chr11:43914250-43914489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               83, 12
               

               Conread position:
               258-492
               

               Cow position:
               chr11:897630-897864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               83, 142
               

               Conread position:
               258-496
               

               Cow position:
               chr11:77013741-77013973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               83, 57
               

               Conread position:
               269-456
               

               Cow position:
               chr11:64408944-64409130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               68, 51
               

               Conread position:
               271-496
               

               Cow position:
               chr11:34968644-34968410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               70, 216
               

               Conread position:
               273-487
               

               Cow position:
               chr11:30843047-30842829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               68, 116
               

               Conread position:
               279-486
               

               Cow position:
               chr11:25783690-25783909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               34, 40
               

               Conread position:
               281-502
               

               Cow position:
               chr11:46884353-46884585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               60, 196
               

               Conread position:
               285-496
               

               Cow position:
               chr11:63478361-63478568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               186, 101
               

               Conread position:
               287-487
               

               Cow position:
               chr11:86895362-86895567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               287-518
               

               Cow position:
               chr11:77017227-77017454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               26, 34
               

               Conread position:
               289-486
               

               Cow position:
               chr11:1980280-1980072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 197
               

               Conread position:
               294-503
               

               Cow position:
               chr11:12555313-12555095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               47, 194
               

               Conread position:
               302-471
               

               Cow position:
               chr11:63484938-63485111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               39, 110
               

               Conread position:
               303-487
               

               Cow position:
               chr11:41278187-41278382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               337-505
               

               Cow position:
               chr11:15591434-15591271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               338-475
               

               Cow position:
               chr11:30986680-30986819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               338-494
               

               Cow position:
               chr11:70821086-70821243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               65, 143
               

               Conread position:
               341-490
               

               Cow position:
               chr11:63977102-63977254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               358-518
               

               Cow position:
               chr11:31525590-31525428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               469-752
               

               Cow position:
               chr11:34397924-34397638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               68, 41
               

               Conread position:
               470-669
               

               Cow position:
               chr11:15885740-15885539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               67, 45
               

               Conread position:
               470-834
               

               Cow position:
               chr11:57153217-57153588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               19, 77
               

               Conread position:
               470-836
               

               Cow position:
               chr11:22851486-22851108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               470-912
               

               Cow position:
               chr11:25856639-25856179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               328
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               67, 19
               

               Conread position:
               470-1035
               

               Cow position:
               chr11:77756313-77756888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 119
               

               Conread position:
               470-1042
               

               Cow position:
               chr11:10877697-10877103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 36
               

               Conread position:
               470-1057
               

               Cow position:
               chr11:82529307-82528741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 46
               

               Conread position:
               470-1059
               

               Cow position:
               chr11:69491862-69491257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 37
               

               Conread position:
               471-1045
               

               Cow position:
               chr11:25807295-25807890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 36
               

               Conread position:
               474-1029
               

               Cow position:
               chr11:24008540-24007953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 44
               

               Conread position:
               478-1037
               

               Cow position:
               chr11:77772258-77772819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 32
               

               Conread position:
               479-1041
               

               Cow position:
               chr11:57062303-57061742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               480-667
               

               Cow position:
               chr11:58793572-58793758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               49, 23
               

               Conread position:
               480-930
               

               Cow position:
               chr11:55119905-55119459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 36
               

               Conread position:
               480-948
               

               Cow position:
               chr11:40574336-40574803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               320
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               57, 37
               

               Conread position:
               514-804
               

               Cow position:
               chr11:77819873-77820162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               23, 45
               

               Conread position:
               515-831
               

               Cow position:
               chr11:21893081-21893392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               28, 8
               

               Conread position:
               515-852
               

               Cow position:
               chr11:34761329-34761658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 43
               

               Conread position:
               517-1041
               

               Cow position:
               chr11:43831406-43831928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 138
               

               Conread position:
               522-961
               

               Cow position:
               chr11:52859860-52859399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 7
               

               Conread position:
               531-933
               

               Cow position:
               chr11:9424301-9423886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 159
               

               Conread position:
               540-736
               

               Cow position:
               chr11:18452772-18452968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               166, 15
               

               Conread position:
               540-825
               

               Cow position:
               chr11:34303838-34303547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 14
               

               Conread position:
               540-928
               

               Cow position:
               chr11:18153876-18154274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 16
               

               Conread position:
               540-931
               

               Cow position:
               chr11:39830853-39831248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 15
               

               Conread position:
               540-945
               

               Cow position:
               chr11:51177847-51177450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 14
               

               Conread position:
               540-946
               

               Cow position:
               chr11:12791145-12790760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               284
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               307, 14
               

               Conread position:
               540-1042
               

               Cow position:
               chr11:35251616-35252125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 14
               

               Conread position:
               544-1034
               

               Cow position:
               chr11:5221061-5221552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 10
               

               Conread position:
               545-831
               

               Cow position:
               chr11:34265768-34265486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               7, 210
               

               Conread position:
               553-861
               

               Cow position:
               chr11:34024929-34024608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               553-968
               

               Cow position:
               chr11:25972573-25972974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 96
               

               Conread position:
               604-1035
               

               Cow position:
               chr11:60822421-60822860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               309
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               90, 58
               

               Conread position:
               619-931
               

               Cow position:
               chr11:1774739-1775062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               35, 106
               

               Conread position:
               672-1029
               

               Cow position:
               chr11:41727132-41726777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               35, 5
               

               Conread position:
               674-806
               

               Cow position:
               chr11:74171463-74171597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               35, 48
               

               Conread position:
               701-1035
               

               Cow position:
               chr11:26256206-26256535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               132, 92
               

               Conread position:
               703-1024
               

               Cow position:
               chr11:26787622-26787295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               148, 165
               

               Conread position:
               710-906
               

               Cow position:
               chr11:7131137-7130943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               142, 8
               

               Conread position:
               710-930
               

               Cow position:
               chr11:60436970-60437187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               138, 15
               

               Conread position:
               711-1029
               

               Cow position:
               chr11:9970786-9971105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               138, 71
               

               Conread position:
               711-1042
               

               Cow position:
               chr11:59429963-59430293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               110, 188
               

               Conread position:
               713-862
               

               Cow position:
               chr11:56962457-56962612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               719-1047
               

               Cow position:
               chr11:87169425-87169746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               45, 181
               

               Conread position:
               720-1025
               

               Cow position:
               chr11:23738595-23738894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               49, 181
               

               Conread position:
               720-1035
               

               Cow position:
               chr11:29004634-29004297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 239
               

               Conread position:
               720-1042
               

               Cow position:
               chr11:85537745-85537427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               25, 102
               

               Conread position:
               720-1052
               

               Cow position:
               chr11:17192087-17192424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 185
               

               Conread position:
               722-949
               

               Cow position:
               chr11:43435325-43435090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               725-1047
               

               Cow position:
               chr11:58313424-58313096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               25, 46
               

               Conread position:
               727-983
               

               Cow position:
               chr11:80000024-79999780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               206, 111
               

               Conread position:
               730-1035
               

               Cow position:
               chr11:33103472-33103777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 206
               

               Conread position:
               745-888
               

               Cow position:
               chr11:65648612-65648761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               745-1041
               

               Cow position:
               chr11:21121410-21121120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               30, 14
               

               Conread position:
               757-1031
               

               Cow position:
               chr11:60512905-60512651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               73, 67
               

               Conread position:
               769-1035
               

               Cow position:
               chr11:12897133-12896868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               80, 104
               

               Conread position:
               828-1059
               

               Cow position:
               chr11:57753240-57753468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               35, 6
               
Show alignments to all cow chromosomes.
Conread position:	22-124
Cow position:	chr11:55119964-55119865 (view UCSC Genome Browser custom track)
Alignm length:	103
Alignm identity:	86
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	72, 0
Conread position:	32-124
Cow position:	chr11:82529351-82529257 (view UCSC Genome Browser custom track)
Alignm length:	95
Alignm identity:	82
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	65, 0
Conread position:	86-409
Cow position:	chr11:40479062-40478742 (view UCSC Genome Browser custom track)
Alignm length:	333
Alignm identity:	228
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	73, 8
Conread position:	90-471
Cow position:	chr11:30210025-30209644 (view UCSC Genome Browser custom track)
Alignm length:	394
Alignm identity:	259
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	236, 23
Conread position:	114-483
Cow position:	chr11:6245140-6245512 (view UCSC Genome Browser custom track)
Alignm length:	382
Alignm identity:	258
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	217, 18
Conread position:	114-494
Cow position:	chr11:7460799-7460429 (view UCSC Genome Browser custom track)
Alignm length:	390
Alignm identity:	262
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	24, 6
Conread position:	114-498
Cow position:	chr11:24438406-24438009 (view UCSC Genome Browser custom track)
Alignm length:	406
Alignm identity:	267
Alignm E-value:	9e-32
Alignm gaps (pig, cow):	147, 17
Conread position:	117-448
Cow position:	chr11:18244117-18243790 (view UCSC Genome Browser custom track)
Alignm length:	339
Alignm identity:	229
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	234, 14
Conread position:	117-486
Cow position:	chr11:30720918-30721294 (view UCSC Genome Browser custom track)
Alignm length:	386
Alignm identity:	249
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	50, 7
Conread position:	118-506
Cow position:	chr11:66572678-66572280 (view UCSC Genome Browser custom track)
Alignm length:	405
Alignm identity:	269
Alignm E-value:	5e-37
Alignm gaps (pig, cow):	130, 11
Conread position:	120-494
Cow position:	chr11:4663224-4662862 (view UCSC Genome Browser custom track)
Alignm length:	384
Alignm identity:	251
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	8, 52
Conread position:	125-482
Cow position:	chr11:66041100-66041462 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	244
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	119, 167
Conread position:	126-499
Cow position:	chr11:45619180-45619554 (view UCSC Genome Browser custom track)
Alignm length:	386
Alignm identity:	256
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	38, 5
Conread position:	127-389
Cow position:	chr11:36799472-36799215 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	184
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	210, 115
Conread position:	127-484
Cow position:	chr11:77750941-77750571 (view UCSC Genome Browser custom track)
Alignm length:	378
Alignm identity:	250
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	181, 43
Conread position:	127-501
Cow position:	chr11:26144267-26143889 (view UCSC Genome Browser custom track)
Alignm length:	389
Alignm identity:	269
Alignm E-value:	9.94922e-44
Alignm gaps (pig, cow):	43, 5
Conread position:	128-311
Cow position:	chr11:30596819-30597003 (view UCSC Genome Browser custom track)
Alignm length:	186
Alignm identity:	136
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	113, 6
Conread position:	129-437
Cow position:	chr11:32693639-32693340 (view UCSC Genome Browser custom track)
Alignm length:	317
Alignm identity:	212
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	210, 84
Conread position:	129-502
Cow position:	chr11:63435350-63435729 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	261
Alignm E-value:	2.99878e-43
Alignm gaps (pig, cow):	208, 41
Conread position:	131-240
Cow position:	chr11:35363332-35363441 (view UCSC Genome Browser custom track)
Alignm length:	110
Alignm identity:	87
Alignm E-value:	9e-21
Alignm gaps (pig, cow):	0, 0