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Cow genome map

           
Conread name:
           
Ss1.1-Ova1-OVRM10225B12.5
        

               
Conread position:
               
30-124
               

               
Cow position:
               
chr5:12329167-12329261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
84-472
               

               
Cow position:
               
chr5:11540219-11539829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
115-394
               

               
Cow position:
               
chr5:39258383-39258646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
119-497
               

               
Cow position:
               
chr5:44796865-44796488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
123-298
               

               
Cow position:
               
chr5:21944265-21944438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
123-498
               

               
Cow position:
               
chr5:19335917-19335529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
125-475
               

               
Cow position:
               
chr5:22242899-22242548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 6
               

               
Conread position:
               
125-501
               

               
Cow position:
               
chr5:30302765-30303135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
209, 45
               

               
Conread position:
               
127-307
               

               
Cow position:
               
chr5:7140236-7140057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
127-471
               

               
Cow position:
               
chr5:30487109-30487449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
128-311
               

               
Cow position:
               
chr5:54405017-54404837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
128-409
               

               
Cow position:
               
chr5:53710818-53710533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
130-388
               

               
Cow position:
               
chr5:52000099-52000353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
200, 40
               

               
Conread position:
               
131-252
               

               
Cow position:
               
chr5:65933052-65932930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
131-284
               

               
Cow position:
               
chr5:9859835-9859685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
131-295
               

               
Cow position:
               
chr5:41486863-41486700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 117
               

               
Conread position:
               
131-296
               

               
Cow position:
               
chr5:43816730-43816567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
119, 61
               

               
Conread position:
               
131-297
               

               
Cow position:
               
chr5:8994688-8994526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
131-297
               

               
Cow position:
               
chr5:16184965-16185127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
131-297
               

               
Cow position:
               
chr5:71579052-71579215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
131-298
               

               
Cow position:
               
chr5:58490595-58490762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
131-300
               

               
Cow position:
               
chr5:23856288-23856118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
35, 86
               

               
Conread position:
               
131-306
               

               
Cow position:
               
chr5:26790578-26790407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
131-310
               

               
Cow position:
               
chr5:36855082-36855256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
131-311
               

               
Cow position:
               
chr5:12709763-12709942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
131-311
               

               
Cow position:
               
chr5:34300794-34300972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
131-311
               

               
Cow position:
               
chr5:34528439-34528604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
131-312
               

               
Cow position:
               
chr5:35235831-35235655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
131-321
               

               
Cow position:
               
chr5:2500311-2500116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
131-327
               

               
Cow position:
               
chr5:21964163-21964358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr5:56820384-56820188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
110, 39
               

               
Conread position:
               
131-335
               

               
Cow position:
               
chr5:39875001-39875201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
131-335
               

               
Cow position:
               
chr5:75437015-75436809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
131-338
               

               
Cow position:
               
chr5:28926306-28926100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
131-338
               

               
Cow position:
               
chr5:61840064-61840268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
131-339
               

               
Cow position:
               
chr5:34638762-34638965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
131-339
               

               
Cow position:
               
chr5:47313351-47313554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
131-380
               

               
Cow position:
               
chr5:42744666-42744908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
242, 39
               

               
Conread position:
               
131-382
               

               
Cow position:
               
chr5:63427128-63426876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
181, 23
               

               
Conread position:
               
131-389
               

               
Cow position:
               
chr5:62142548-62142812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
84, 64
               

               
Conread position:
               
131-401
               

               
Cow position:
               
chr5:34463707-34463431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
109, 120
               

               
Conread position:
               
131-404
               

               
Cow position:
               
chr5:45273623-45273351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
208, 107
               

               
Conread position:
               
131-407
               

               
Cow position:
               
chr5:54311210-54311490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
35, 123
               

               
Conread position:
               
131-409
               

               
Cow position:
               
chr5:458360-458642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
131-430
               

               
Cow position:
               
chr5:51935064-51935366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
131-435
               

               
Cow position:
               
chr5:53855572-53855887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
131-437
               

               
Cow position:
               
chr5:24348985-24349282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
131-438
               

               
Cow position:
               
chr5:22643340-22643055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
131-455
               

               
Cow position:
               
chr5:57419915-57419590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
131-458
               

               
Cow position:
               
chr5:3002796-3003115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 7
               

               
Conread position:
               
131-461
               

               
Cow position:
               
chr5:26097173-26097502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
210, 77
               

               
Conread position:
               
131-461
               

               
Cow position:
               
chr5:64137129-64137470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
36, 89
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chr5:45397456-45397779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
212, 39
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chr5:57327674-57328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
155, 107
               

               
Conread position:
               
131-464
               

               
Cow position:
               
chr5:6504002-6503661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
131-466
               

               
Cow position:
               
chr5:34049989-34050325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
131-468
               

               
Cow position:
               
chr5:20779508-20779180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
182, 39
               

               
Conread position:
               
131-468
               

               
Cow position:
               
chr5:50599934-50600265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
206, 40
               

               
Conread position:
               
131-471
               

               
Cow position:
               
chr5:9894249-9893903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
131-471
               

               
Cow position:
               
chr5:28224330-28224664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
131-471
               

               
Cow position:
               
chr5:55756553-55756191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
131-472
               

               
Cow position:
               
chr5:12761238-12760897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
131-472
               

               
Cow position:
               
chr5:30253619-30253963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 39
               

               
Conread position:
               
131-475
               

               
Cow position:
               
chr5:18574048-18574408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
131-475
               

               
Cow position:
               
chr5:29903644-29903317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 112
               

               
Conread position:
               
131-475
               

               
Cow position:
               
chr5:47871169-47870828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
131-475
               

               
Cow position:
               
chr5:52165301-52164947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 115
               

               
Conread position:
               
131-475
               

               
Cow position:
               
chr5:54048471-54048124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
131-484
               

               
Cow position:
               
chr5:58144726-58144369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr5:16938131-16937798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr5:17063213-17062843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr5:32339086-32338725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
179, 31
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr5:45225947-45225581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
131-487
               

               
Cow position:
               
chr5:66972305-66972668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 115
               

               
Conread position:
               
131-488
               

               
Cow position:
               
chr5:5257414-5257048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
131-491
               

               
Cow position:
               
chr5:50722926-50723289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
210, 94
               

               
Conread position:
               
131-491
               

               
Cow position:
               
chr5:55068588-55068939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
211, 52
               

               
Conread position:
               
131-492
               

               
Cow position:
               
chr5:35208144-35208507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
131-493
               

               
Cow position:
               
chr5:35247232-35246861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 62
               

               
Conread position:
               
131-493
               

               
Cow position:
               
chr5:39333661-39333282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
160, 115
               

               
Conread position:
               
131-493
               

               
Cow position:
               
chr5:72951717-72952068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
131-494
               

               
Cow position:
               
chr5:51053770-51053403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 39
               

               
Conread position:
               
131-494
               

               
Cow position:
               
chr5:66581841-66582218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
131-495
               

               
Cow position:
               
chr5:55176768-55177126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 39
               

               
Conread position:
               
131-495
               

               
Cow position:
               
chr5:72903354-72902997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
131-496
               

               
Cow position:
               
chr5:1247154-1247512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
202, 38
               

               
Conread position:
               
131-496
               

               
Cow position:
               
chr5:35826481-35826841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
211, 42
               

               
Conread position:
               
131-497
               

               
Cow position:
               
chr5:11427360-11426990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 106
               

               
Conread position:
               
131-497
               

               
Cow position:
               
chr5:30092749-30092381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
131-502
               

               
Cow position:
               
chr5:29097237-29097614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
131-506
               

               
Cow position:
               
chr5:59051-58673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
211, 51
               

               
Conread position:
               
131-508
               

               
Cow position:
               
chr5:52667908-52668296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 109
               

               
Conread position:
               
131-511
               

               
Cow position:
               
chr5:6528560-6528923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
131-511
               

               
Cow position:
               
chr5:44028423-44028043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr5:56680125-56680496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
131-525
               

               
Cow position:
               
chr5:22737986-22738377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
132-406
               

               
Cow position:
               
chr5:63987572-63987294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
132-489
               

               
Cow position:
               
chr5:64140409-64140777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
132-514
               

               
Cow position:
               
chr5:30178631-30178238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
133-283
               

               
Cow position:
               
chr5:72150127-72150275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
133-310
               

               
Cow position:
               
chr5:28927709-28927535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
133-312
               

               
Cow position:
               
chr5:18090603-18090792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
133-339
               

               
Cow position:
               
chr5:5111193-5110993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
133-339
               

               
Cow position:
               
chr5:14629933-14629729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
133-339
               

               
Cow position:
               
chr5:30950036-30949834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
133-339
               

               
Cow position:
               
chr5:67540323-67540120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 37
               

               
Conread position:
               
133-371
               

               
Cow position:
               
chr5:32696940-32696705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
180, 21
               

               
Conread position:
               
133-379
               

               
Cow position:
               
chr5:50821662-50821910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
177, 29
               

               
Conread position:
               
133-388
               

               
Cow position:
               
chr5:64758890-64758631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
179, 7
               

               
Conread position:
               
133-391
               

               
Cow position:
               
chr5:57575649-57575911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
174, 42
               

               
Conread position:
               
133-409
               

               
Cow position:
               
chr5:9090140-9089872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
133-409
               

               
Cow position:
               
chr5:58855983-58856256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
208, 117
               

               
Conread position:
               
133-420
               

               
Cow position:
               
chr5:37646666-37646377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
133-439
               

               
Cow position:
               
chr5:66366398-66366699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
204, 34
               

               
Conread position:
               
133-469
               

               
Cow position:
               
chr5:74643791-74643464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-470
               

               
Cow position:
               
chr5:64321633-64321982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
133-470
               

               
Cow position:
               
chr5:65776502-65776156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
133-471
               

               
Cow position:
               
chr5:12557409-12557065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
166, 9
               

               
Conread position:
               
133-471
               

               
Cow position:
               
chr5:21617338-21617677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-471
               

               
Cow position:
               
chr5:29827929-29828270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
165, 37
               

               
Conread position:
               
133-471
               

               
Cow position:
               
chr5:34561892-34562231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
133-472
               

               
Cow position:
               
chr5:11229789-11229448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-472
               

               
Cow position:
               
chr5:40109379-40109707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
133-475
               

               
Cow position:
               
chr5:7044827-7044480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-475
               

               
Cow position:
               
chr5:14550702-14550356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
204, 104
               

               
Conread position:
               
133-475
               

               
Cow position:
               
chr5:45845812-45845464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-475
               

               
Cow position:
               
chr5:57101896-57101571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
133-476
               

               
Cow position:
               
chr5:8024315-8023988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
201, 26
               

               
Conread position:
               
133-479
               

               
Cow position:
               
chr5:30629278-30628923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-484
               

               
Cow position:
               
chr5:23168945-23168595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
204, 37
               

               
Conread position:
               
133-484
               

               
Cow position:
               
chr5:28302860-28302521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 36
               

               
Conread position:
               
133-485
               

               
Cow position:
               
chr5:56070736-56071091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 40
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr5:57935229-57934883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
207, 40
               

               
Conread position:
               
133-491
               

               
Cow position:
               
chr5:56028647-56028303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-492
               

               
Cow position:
               
chr5:21828746-21829104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 37
               

               
Conread position:
               
133-494
               

               
Cow position:
               
chr5:69461214-69461580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
125, 37
               

               
Conread position:
               
133-496
               

               
Cow position:
               
chr5:41010113-41009765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
133-497
               

               
Cow position:
               
chr5:30276577-30276934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
133-498
               

               
Cow position:
               
chr5:56014614-56014971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
208, 46
               

               
Conread position:
               
133-499
               

               
Cow position:
               
chr5:65752736-65753110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 113
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chr5:18289009-18289366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 113
               

               
Conread position:
               
133-501
               

               
Cow position:
               
chr5:55966999-55966623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
133-502
               

               
Cow position:
               
chr5:24996343-24995973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
204, 37
               

               
Conread position:
               
133-518
               

               
Cow position:
               
chr5:30844993-30845382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
133-526
               

               
Cow position:
               
chr5:2309680-2309281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
134-242
               

               
Cow position:
               
chr5:72845900-72845792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-307
               

               
Cow position:
               
chr5:34115531-34115702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
134-309
               

               
Cow position:
               
chr5:24485555-24485385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
134-310
               

               
Cow position:
               
chr5:72564641-72564816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
134-311
               

               
Cow position:
               
chr5:4032113-4031936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
134-369
               

               
Cow position:
               
chr5:31481027-31481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
202, 68
               

               
Conread position:
               
134-406
               

               
Cow position:
               
chr5:6045172-6045447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
159, 36
               

               
Conread position:
               
134-409
               

               
Cow position:
               
chr5:26477131-26476860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
207, 36
               

               
Conread position:
               
134-409
               

               
Cow position:
               
chr5:59115262-59115539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
134-429
               

               
Cow position:
               
chr5:42777644-42777929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
241, 116
               

               
Conread position:
               
134-440
               

               
Cow position:
               
chr5:26990273-26990571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
201, 36
               

               
Conread position:
               
134-447
               

               
Cow position:
               
chr5:54350487-54350173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
134-469
               

               
Cow position:
               
chr5:16179644-16179303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
182, 58
               

               
Conread position:
               
134-471
               

               
Cow position:
               
chr5:41164969-41165304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
206, 13
               

               
Conread position:
               
134-471
               

               
Cow position:
               
chr5:72895569-72895908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
207, 38
               

               
Conread position:
               
134-472
               

               
Cow position:
               
chr5:14314406-14314739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
273, 36
               

               
Conread position:
               
134-475
               

               
Cow position:
               
chr5:7057525-7057171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
134-475
               

               
Cow position:
               
chr5:47601700-47602034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
207, 39
               

               
Conread position:
               
134-482
               

               
Cow position:
               
chr5:35459413-35459063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
174, 33
               

               
Conread position:
               
134-484
               

               
Cow position:
               
chr5:53835595-53835957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
134-485
               

               
Cow position:
               
chr5:32975672-32975321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
134-485
               

               
Cow position:
               
chr5:44848145-44847791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
134-491
               

               
Cow position:
               
chr5:42064079-42064450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
31, 129
               

               
Conread position:
               
134-494
               

               
Cow position:
               
chr5:4280342-4280685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
155, 35
               

               
Conread position:
               
134-496
               

               
Cow position:
               
chr5:36868621-36868983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
207, 11
               

               
Conread position:
               
134-511
               

               
Cow position:
               
chr5:20127937-20128314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
179, 13
               

               
Conread position:
               
134-512
               

               
Cow position:
               
chr5:42845725-42845338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 135
               

               
Conread position:
               
135-298
               

               
Cow position:
               
chr5:16508977-16509140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-311
               

               
Cow position:
               
chr5:29980101-29979929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
135-338
               

               
Cow position:
               
chr5:16206273-16206076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
135-369
               

               
Cow position:
               
chr5:65883894-65883656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 116
               

               
Conread position:
               
135-370
               

               
Cow position:
               
chr5:21920253-21920488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 185
               

               
Conread position:
               
135-389
               

               
Cow position:
               
chr5:37808794-37808527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
135-414
               

               
Cow position:
               
chr5:19523779-19524067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 109
               

               
Conread position:
               
135-466
               

               
Cow position:
               
chr5:29680961-29681311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 342
               

               
Conread position:
               
135-471
               

               
Cow position:
               
chr5:65941368-65941028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
202, 35
               

               
Conread position:
               
135-472
               

               
Cow position:
               
chr5:62172298-62172621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
202, 35
               

               
Conread position:
               
135-475
               

               
Cow position:
               
chr5:47756654-47756998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
135-475
               

               
Cow position:
               
chr5:62107609-62107258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
162, 36
               

               
Conread position:
               
135-476
               

               
Cow position:
               
chr5:71494699-71495040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
135-483
               

               
Cow position:
               
chr5:44049580-44049934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
135-485
               

               
Cow position:
               
chr5:70951994-70951656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
306, 35
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr5:12434418-12434772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
135-489
               

               
Cow position:
               
chr5:72035205-72034858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
135-494
               

               
Cow position:
               
chr5:12322919-12322567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
193, 35
               

               
Conread position:
               
135-494
               

               
Cow position:
               
chr5:39936984-39937359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
135-495
               

               
Cow position:
               
chr5:16893890-16893532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
135-495
               

               
Cow position:
               
chr5:44446986-44446629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
135-495
               

               
Cow position:
               
chr5:46512881-46512523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
207, 36
               

               
Conread position:
               
136-409
               

               
Cow position:
               
chr5:14473534-14473247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
136-464
               

               
Cow position:
               
chr5:12673579-12673265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
198, 32
               

               
Conread position:
               
136-470
               

               
Cow position:
               
chr5:73168117-73167793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
136-475
               

               
Cow position:
               
chr5:3549903-3549579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
136-484
               

               
Cow position:
               
chr5:32394477-32394837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
136-489
               

               
Cow position:
               
chr5:43923265-43922931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 57
               

               
Conread position:
               
136-493
               

               
Cow position:
               
chr5:33560851-33560490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
205, 111
               

               
Conread position:
               
136-497
               

               
Cow position:
               
chr5:69337712-69338064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
205, 34
               

               
Conread position:
               
137-296
               

               
Cow position:
               
chr5:17644772-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
137-469
               

               
Cow position:
               
chr5:55955793-55956130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
203, 23
               

               
Conread position:
               
137-495
               

               
Cow position:
               
chr5:57074450-57074089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
137-497
               

               
Cow position:
               
chr5:17999611-17999250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
26, 116
               

               
Conread position:
               
138-389
               

               
Cow position:
               
chr5:43992206-43992460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
98, 109
               

               
Conread position:
               
138-475
               

               
Cow position:
               
chr5:12901800-12902145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
139-297
               

               
Cow position:
               
chr5:76119436-76119593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
139-311
               

               
Cow position:
               
chr5:51801087-51800919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
139-322
               

               
Cow position:
               
chr5:38076597-38076419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
139-410
               

               
Cow position:
               
chr5:21040090-21039826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
139-456
               

               
Cow position:
               
chr5:29353242-29352925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
105, 34
               

               
Conread position:
               
139-472
               

               
Cow position:
               
chr5:35763161-35763467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
191, 31
               

               
Conread position:
               
139-475
               

               
Cow position:
               
chr5:11668300-11667958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
83, 108
               

               
Conread position:
               
139-475
               

               
Cow position:
               
chr5:34976960-34976614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr5:49474659-49474301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
139-512
               

               
Cow position:
               
chr5:40039884-40039523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
196, 34
               

               
Conread position:
               
139-513
               

               
Cow position:
               
chr5:5855751-5856121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
140-380
               

               
Cow position:
               
chr5:13717684-13717442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 104
               

               
Conread position:
               
140-474
               

               
Cow position:
               
chr5:33414525-33414182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
141-455
               

               
Cow position:
               
chr5:37645962-37646281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
141-469
               

               
Cow position:
               
chr5:71846036-71845706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr5:59082304-59081942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
143-409
               

               
Cow position:
               
chr5:23678814-23678549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
143-433
               

               
Cow position:
               
chr5:60183691-60183984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
144-496
               

               
Cow position:
               
chr5:63647584-63647229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
145-466
               

               
Cow position:
               
chr5:53946787-53947116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
145-475
               

               
Cow position:
               
chr5:31475573-31475910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
146-339
               

               
Cow position:
               
chr5:64168347-64168158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
146-409
               

               
Cow position:
               
chr5:41293973-41294238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
195, 100
               

               
Conread position:
               
147-308
               

               
Cow position:
               
chr5:60448109-60448266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
147-339
               

               
Cow position:
               
chr5:56635794-56635976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
165, 67
               

               
Conread position:
               
147-496
               

               
Cow position:
               
chr5:43371304-43370947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 101
               

               
Conread position:
               
148-310
               

               
Cow position:
               
chr5:56469931-56469770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
149-475
               

               
Cow position:
               
chr5:57768087-57767762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
150-393
               

               
Cow position:
               
chr5:59325940-59325702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
150-534
               

               
Cow position:
               
chr5:36039107-36038726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
154-382
               

               
Cow position:
               
chr5:35125954-35126184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
154-494
               

               
Cow position:
               
chr5:36650450-36650799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
159, 94
               

               
Conread position:
               
156-464
               

               
Cow position:
               
chr5:17555129-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
158, 37
               

               
Conread position:
               
160-515
               

               
Cow position:
               
chr5:59384784-59384422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
161-389
               

               
Cow position:
               
chr5:47323372-47323598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
180, 87
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr5:50575692-50576012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
180, 85
               

               
Conread position:
               
162-466
               

               
Cow position:
               
chr5:59395565-59395881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
141, 79
               

               
Conread position:
               
163-490
               

               
Cow position:
               
chr5:33833953-33834281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
189, 76
               

               
Conread position:
               
164-409
               

               
Cow position:
               
chr5:59873181-59872922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
165-483
               

               
Cow position:
               
chr5:57527007-57526693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
225, 87
               

               
Conread position:
               
166-475
               

               
Cow position:
               
chr5:43402812-43403135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
175-471
               

               
Cow position:
               
chr5:19752226-19752523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 46
               

               
Conread position:
               
175-500
               

               
Cow position:
               
chr5:61914491-61914824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
133, 63
               

               
Conread position:
               
176-472
               

               
Cow position:
               
chr5:49668400-49668706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
176-499
               

               
Cow position:
               
chr5:29060997-29060690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
177-472
               

               
Cow position:
               
chr5:57756108-57755811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
166, 82
               

               
Conread position:
               
184-492
               

               
Cow position:
               
chr5:41935727-41935409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
190-503
               

               
Cow position:
               
chr5:61455781-61456101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 60
               

               
Conread position:
               
192-485
               

               
Cow position:
               
chr5:34624895-34625185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 56
               

               
Conread position:
               
195-475
               

               
Cow position:
               
chr5:11769209-11769498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
195-475
               

               
Cow position:
               
chr5:59627033-59626746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
146, 63
               

               
Conread position:
               
195-479
               

               
Cow position:
               
chr5:63627584-63627310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
195-487
               

               
Cow position:
               
chr5:30247583-30247286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
195-492
               

               
Cow position:
               
chr5:7012907-7012606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
146, 46
               

               
Conread position:
               
195-495
               

               
Cow position:
               
chr5:20843459-20843150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
195-495
               

               
Cow position:
               
chr5:43604084-43604386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
146, 42
               

               
Conread position:
               
197-409
               

               
Cow position:
               
chr5:45420191-45419981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 49
               

               
Conread position:
               
198-447
               

               
Cow position:
               
chr5:55796017-55795772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
198-485
               

               
Cow position:
               
chr5:20995151-20994851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
201-499
               

               
Cow position:
               
chr5:14345148-14344848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
140, 45
               

               
Conread position:
               
203-483
               

               
Cow position:
               
chr5:37255389-37255099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
208-475
               

               
Cow position:
               
chr5:63192788-63192528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 54
               

               
Conread position:
               
211-472
               

               
Cow position:
               
chr5:69099675-69099942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 45
               

               
Conread position:
               
215-463
               

               
Cow position:
               
chr5:49501864-49501604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
216-470
               

               
Cow position:
               
chr5:20288302-20288037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
217-501
               

               
Cow position:
               
chr5:50101415-50101127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
218-483
               

               
Cow position:
               
chr5:54875736-54875461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
98, 42
               

               
Conread position:
               
220-485
               

               
Cow position:
               
chr5:30232871-30233145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
220-494
               

               
Cow position:
               
chr5:62811789-62812074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
220-496
               

               
Cow position:
               
chr5:60210178-60209898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
221-494
               

               
Cow position:
               
chr5:26549175-26548896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
228-487
               

               
Cow position:
               
chr5:57101552-57101288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
238-492
               

               
Cow position:
               
chr5:56613584-56613319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
241-495
               

               
Cow position:
               
chr5:52852953-52853212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
6, 239
               

               
Conread position:
               
243-460
               

               
Cow position:
               
chr5:16939608-16939381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 16
               

               
Conread position:
               
250-475
               

               
Cow position:
               
chr5:3582552-3582781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
91, 138
               

               
Conread position:
               
250-517
               

               
Cow position:
               
chr5:57062536-57062257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
251-471
               

               
Cow position:
               
chr5:51065523-51065737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
252-491
               

               
Cow position:
               
chr5:22667064-22667310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
253-486
               

               
Cow position:
               
chr5:30561927-30562163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
81, 151
               

               
Conread position:
               
253-495
               

               
Cow position:
               
chr5:60515032-60514778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 6
               

               
Conread position:
               
254-471
               

               
Cow position:
               
chr5:69383251-69383473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
87, 143
               

               
Conread position:
               
254-481
               

               
Cow position:
               
chr5:46541059-46540828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
254-497
               

               
Cow position:
               
chr5:61049328-61049578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
87, 234
               

               
Conread position:
               
255-493
               

               
Cow position:
               
chr5:73253408-73253650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
255-506
               

               
Cow position:
               
chr5:50824589-50824839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 146
               

               
Conread position:
               
256-471
               

               
Cow position:
               
chr5:4267668-4267882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
85, 140
               

               
Conread position:
               
258-471
               

               
Cow position:
               
chr5:6520011-6520228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 125
               

               
Conread position:
               
258-528
               

               
Cow position:
               
chr5:34915053-34914781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
83, 229
               

               
Conread position:
               
261-488
               

               
Cow position:
               
chr5:17104856-17105085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 132
               

               
Conread position:
               
263-462
               

               
Cow position:
               
chr5:12351802-12351599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 104
               

               
Conread position:
               
266-518
               

               
Cow position:
               
chr5:2240981-2240715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
270-558
               

               
Cow position:
               
chr5:5016441-5016735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
271-496
               

               
Cow position:
               
chr5:64060459-64060692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 212
               

               
Conread position:
               
271-497
               

               
Cow position:
               
chr5:17828466-17828227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
272-486
               

               
Cow position:
               
chr5:44196915-44196693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
273-469
               

               
Cow position:
               
chr5:65552696-65552501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
281-491
               

               
Cow position:
               
chr5:51289568-51289357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
285-475
               

               
Cow position:
               
chr5:34288223-34288028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
285-520
               

               
Cow position:
               
chr5:49821455-49821705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
287-471
               

               
Cow position:
               
chr5:29256678-29256486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
289-502
               

               
Cow position:
               
chr5:15991608-15991391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
294-465
               

               
Cow position:
               
chr5:51233983-51233808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 157
               

               
Conread position:
               
338-475
               

               
Cow position:
               
chr5:12562670-12562534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
338-485
               

               
Cow position:
               
chr5:62996042-62996194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
338-494
               

               
Cow position:
               
chr5:6245578-6245418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
338-502
               

               
Cow position:
               
chr5:58487460-58487623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
338-513
               

               
Cow position:
               
chr5:29599461-29599288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
338-518
               

               
Cow position:
               
chr5:15770371-15770182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
340-510
               

               
Cow position:
               
chr5:56563840-56564005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
342-482
               

               
Cow position:
               
chr5:18578981-18579121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
462-664
               

               
Cow position:
               
chr5:35749030-35748824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 97
               

               
Conread position:
               
470-784
               

               
Cow position:
               
chr5:9585270-9585567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
470-818
               

               
Cow position:
               
chr5:56742134-56741798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
67, 46
               

               
Conread position:
               
470-1035
               

               
Cow position:
               
chr5:51076142-51076735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 292
               

               
Conread position:
               
471-774
               

               
Cow position:
               
chr5:28770734-28770435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
471-878
               

               
Cow position:
               
chr5:57127930-57127517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
471-983
               

               
Cow position:
               
chr5:21145750-21146260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
473-734
               

               
Cow position:
               
chr5:56109678-56109943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
480-728
               

               
Cow position:
               
chr5:53599582-53599832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
515-724
               

               
Cow position:
               
chr5:51953312-51953096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
20, 148
               

               
Conread position:
               
515-798
               

               
Cow position:
               
chr5:10455802-10455515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
515-955
               

               
Cow position:
               
chr5:29431223-29431640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
515-1043
               

               
Cow position:
               
chr5:34483108-34483627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
515-1051
               

               
Cow position:
               
chr5:60968871-60968304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
521-1035
               

               
Cow position:
               
chr5:26562573-26562069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 124
               

               
Conread position:
               
532-784
               

               
Cow position:
               
chr5:13575332-13575600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
540-792
               

               
Cow position:
               
chr5:25925467-25925720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
540-1039
               

               
Cow position:
               
chr5:45911890-45912379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
540-1040
               

               
Cow position:
               
chr5:15882048-15882557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
540-1057
               

               
Cow position:
               
chr5:37048466-37047940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 15
               

               
Conread position:
               
545-721
               

               
Cow position:
               
chr5:38911472-38911300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
554-1052
               

               
Cow position:
               
chr5:23234864-23234366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
128, 17
               

               
Conread position:
               
571-1035
               

               
Cow position:
               
chr5:1304860-1305316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
584-799
               

               
Cow position:
               
chr5:50156214-50156433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 165
               

               
Conread position:
               
585-888
               

               
Cow position:
               
chr5:27493074-27492758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
597-921
               

               
Cow position:
               
chr5:54157055-54156730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
599-861
               

               
Cow position:
               
chr5:21166699-21166965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
610-794
               

               
Cow position:
               
chr5:67577298-67577115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
616-947
               

               
Cow position:
               
chr5:39118512-39118190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
619-951
               

               
Cow position:
               
chr5:10785887-10786240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
693-1035
               

               
Cow position:
               
chr5:25927435-25927786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
709-1035
               

               
Cow position:
               
chr5:37425989-37425655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
711-1004
               

               
Cow position:
               
chr5:61017065-61017354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
137, 11
               

               
Conread position:
               
711-1035
               

               
Cow position:
               
chr5:63173441-63173768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
711-1043
               

               
Cow position:
               
chr5:61029977-61030317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
137, 80
               

               
Conread position:
               
719-1035
               

               
Cow position:
               
chr5:23752983-23753308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
719-1063
               

               
Cow position:
               
chr5:19300206-19300549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
129, 59
               

               
Conread position:
               
720-1029
               

               
Cow position:
               
chr5:70128374-70128081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
720-1033
               

               
Cow position:
               
chr5:27176099-27175785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
129, 178
               

               
Conread position:
               
720-1035
               

               
Cow position:
               
chr5:23646779-23647100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
721-1005
               

               
Cow position:
               
chr5:63160284-63159991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
128, 232
               

               
Conread position:
               
722-1004
               

               
Cow position:
               
chr5:364359-364650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
727-1035
               

               
Cow position:
               
chr5:48224352-48224666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 224
               

               
Conread position:
               
747-1035
               

               
Cow position:
               
chr5:14780687-14780976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
765-1042
               

               
Cow position:
               
chr5:54112101-54111829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 69
               

               
Conread position:
               
769-1042
               

               
Cow position:
               
chr5:25225453-25225739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 179
               

               
Conread position:
               
789-1050
               

               
Cow position:
               
chr5:51952547-51952279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
844-1042
               

               
Cow position:
               
chr5:34168071-34167867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
849-1060
               

               
Cow position:
               
chr5:55985426-55985636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 99
               

               
Conread position:
               
857-1066
               

               
Cow position:
               
chr5:70250275-70250061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 32
               
Show alignments to all cow chromosomes.