Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM1H090179.5 |
| Conread position: | 191-448 |
| Cow position: | chr11:14134849-14135102 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 212-362 |
| Cow position: | chr11:63671472-63671320 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 212-388 |
| Cow position: | chr11:81347774-81347949 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 212-394 |
| Cow position: | chr11:63275863-63275676 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 212-445 |
| Cow position: | chr11:37319416-37319644 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 212-465 |
| Cow position: | chr11:39276970-39276725 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-469 |
| Cow position: | chr11:37334741-37334987 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 221-463 |
| Cow position: | chr11:7662346-7662585 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 221-464 |
| Cow position: | chr11:5441239-5441002 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 232-362 |
| Cow position: | chr11:26280359-26280226 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 232-461 |
| Cow position: | chr11:32389659-32389880 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 132 |
| Conread position: | 233-358 |
| Cow position: | chr11:26232637-26232510 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 233-361 |
| Cow position: | chr11:66166252-66166386 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 233-362 |
| Cow position: | chr11:32205898-32205766 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-362 |
| Cow position: | chr11:61834045-61834176 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 117 |
| Conread position: | 233-362 |
| Cow position: | chr11:80192544-80192676 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-362 |
| Cow position: | chr11:80343823-80343690 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 233-381 |
| Cow position: | chr11:3160975-3160824 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 233-394 |
| Cow position: | chr11:30084372-30084211 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 233-463 |
| Cow position: | chr11:4678059-4678281 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 171 |
| Conread position: | 233-463 |
| Cow position: | chr11:30766893-30766670 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 167 |
| Conread position: | 233-463 |
| Cow position: | chr11:64813977-64814203 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 233-464 |
| Cow position: | chr11:70888299-70888069 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 61, 169 |
| Conread position: | 233-464 |
| Cow position: | chr11:76599903-76599676 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 233-464 |
| Cow position: | chr11:77178347-77178573 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 233-465 |
| Cow position: | chr11:106242-106473 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 59, 169 |
| Conread position: | 233-465 |
| Cow position: | chr11:30216340-30216123 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 233-465 |
| Cow position: | chr11:50649280-50649051 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 167 |
| Conread position: | 233-469 |
| Cow position: | chr11:26305366-26305139 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 235-447 |
| Cow position: | chr11:38679895-38680101 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 235-459 |
| Cow position: | chr11:77161156-77161372 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 57, 103 |
| Conread position: | 235-463 |
| Cow position: | chr11:14353417-14353199 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 131 |
| Conread position: | 236-465 |
| Cow position: | chr11:6575321-6575546 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 157 |
| Conread position: | 237-381 |
| Cow position: | chr11:66033834-66033981 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 237-390 |
| Cow position: | chr11:12167613-12167457 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 237-394 |
| Cow position: | chr11:40366565-40366725 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 237-459 |
| Cow position: | chr11:79726651-79726873 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 131 |
| Conread position: | 240-465 |
| Cow position: | chr11:7044662-7044879 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 241-463 |
| Cow position: | chr11:7050947-7051159 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 241-465 |
| Cow position: | chr11:42119475-42119263 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 250-393 |
| Cow position: | chr11:79807684-79807832 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 255-452 |
| Cow position: | chr11:20991108-20990914 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 161 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 145 |
| Conread position: | 256-393 |
| Cow position: | chr11:35453469-35453610 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 261-465 |
| Cow position: | chr11:2546071-2546272 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 34, 139 |
| Conread position: | 262-465 |
| Cow position: | chr11:5292588-5292391 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 680-849 |
| Cow position: | chr11:48660969-48661140 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 111, 0 |
Show alignments to all cow chromosomes.