Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM1H090179.5 |
| Conread position: | 210-465 |
| Cow position: | chr16:33435624-33435871 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 82, 23 |
| Conread position: | 212-459 |
| Cow position: | chr16:10669501-10669258 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 212-459 |
| Cow position: | chr16:40521983-40522223 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 212-460 |
| Cow position: | chr16:33531441-33531208 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 212-465 |
| Cow position: | chr16:13513338-13513586 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-465 |
| Cow position: | chr16:17162874-17162627 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 215-464 |
| Cow position: | chr16:40501807-40501566 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 120, 18 |
| Conread position: | 221-463 |
| Cow position: | chr16:11484627-11484859 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 222-363 |
| Cow position: | chr16:33377473-33377330 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 222-463 |
| Cow position: | chr16:33439383-33439634 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 227-461 |
| Cow position: | chr16:24586780-24587008 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 232-365 |
| Cow position: | chr16:21725821-21725957 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 127 |
| Conread position: | 232-366 |
| Cow position: | chr16:19262971-19263106 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 232-463 |
| Cow position: | chr16:4141461-4141224 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 232-463 |
| Cow position: | chr16:47366372-47366589 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 233-322 |
| Cow position: | chr16:40511436-40511344 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 233-362 |
| Cow position: | chr16:17734437-17734305 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-389 |
| Cow position: | chr16:14182741-14182586 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 233-463 |
| Cow position: | chr16:571429-571213 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 116 |
| Conread position: | 233-463 |
| Cow position: | chr16:6725171-6725386 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 108 |
| Conread position: | 233-463 |
| Cow position: | chr16:37100742-37100962 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 71 |
| Conread position: | 233-463 |
| Cow position: | chr16:48895789-48896008 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 233-465 |
| Cow position: | chr16:412197-412414 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 233-465 |
| Cow position: | chr16:43861079-43861309 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 168 |
| Conread position: | 234-464 |
| Cow position: | chr16:10178995-10178770 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 119 |
| Conread position: | 237-457 |
| Cow position: | chr16:44460440-44460656 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 47, 162 |
| Conread position: | 237-461 |
| Cow position: | chr16:33874763-33874984 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 42, 163 |
| Conread position: | 237-464 |
| Cow position: | chr16:56209796-56209572 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 237-470 |
| Cow position: | chr16:22243807-22243576 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 164 |
| Conread position: | 237-471 |
| Cow position: | chr16:35415435-35415665 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 240-464 |
| Cow position: | chr16:49910854-49911073 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 240-464 |
| Cow position: | chr16:50508035-50508253 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 157 |
| Conread position: | 241-394 |
| Cow position: | chr16:12093005-12092851 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 243-464 |
| Cow position: | chr16:10933413-10933192 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 38, 158 |
| Conread position: | 244-465 |
| Cow position: | chr16:52619321-52619540 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 249-464 |
| Cow position: | chr16:1631896-1631690 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 299-464 |
| Cow position: | chr16:35445902-35446061 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 576-910 |
| Cow position: | chr16:51579224-51579554 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 600-931 |
| Cow position: | chr16:41886137-41886457 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 60 |
| Conread position: | 736-931 |
| Cow position: | chr16:4860468-4860266 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.