Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM1H090179.5 |
| Conread position: | 212-336 |
| Cow position: | chr2:36417276-36417150 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 212-372 |
| Cow position: | chr2:23043452-23043615 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 212-388 |
| Cow position: | chr2:68426890-68426714 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 212-388 |
| Cow position: | chr2:80804935-80805115 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 212-394 |
| Cow position: | chr2:9946807-9946980 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 212-394 |
| Cow position: | chr2:66671114-66670929 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 21 |
| Conread position: | 212-461 |
| Cow position: | chr2:37366161-37365918 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 212-463 |
| Cow position: | chr2:69131146-69131401 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 212-465 |
| Cow position: | chr2:35453372-35453125 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 212-466 |
| Cow position: | chr2:25375832-25375585 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 214-361 |
| Cow position: | chr2:47380499-47380349 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 215-463 |
| Cow position: | chr2:46565038-46565279 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 119, 18 |
| Conread position: | 215-465 |
| Cow position: | chr2:45927727-45927962 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 221-463 |
| Cow position: | chr2:69133825-69134057 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 222-372 |
| Cow position: | chr2:29418639-29418485 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 222-464 |
| Cow position: | chr2:41586121-41586354 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 222-465 |
| Cow position: | chr2:46567034-46567269 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 222-465 |
| Cow position: | chr2:47149942-47150178 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 222-465 |
| Cow position: | chr2:85383372-85383594 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 117, 11 |
| Conread position: | 222-469 |
| Cow position: | chr2:21336506-21336270 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 223-468 |
| Cow position: | chr2:81185920-81185688 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 224-361 |
| Cow position: | chr2:44979821-44979960 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 227-394 |
| Cow position: | chr2:12565672-12565844 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 232-362 |
| Cow position: | chr2:3472399-3472532 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 232-362 |
| Cow position: | chr2:44683761-44683628 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 232-465 |
| Cow position: | chr2:86327008-86327243 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 173 |
| Conread position: | 233-360 |
| Cow position: | chr2:7316805-7316676 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 233-360 |
| Cow position: | chr2:44546886-44546756 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-361 |
| Cow position: | chr2:40299690-40299821 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 233-361 |
| Cow position: | chr2:43334812-43334943 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 233-362 |
| Cow position: | chr2:12693223-12693091 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-362 |
| Cow position: | chr2:19741241-19741109 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-362 |
| Cow position: | chr2:28916124-28915992 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-362 |
| Cow position: | chr2:70467936-70467803 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 233-362 |
| Cow position: | chr2:82301441-82301573 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 233-374 |
| Cow position: | chr2:68157621-68157762 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 135, 74 |
| Conread position: | 233-394 |
| Cow position: | chr2:39255254-39255094 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 108, 22 |
| Conread position: | 233-396 |
| Cow position: | chr2:15263639-15263800 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 233-446 |
| Cow position: | chr2:35971530-35971744 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 79 |
| Conread position: | 233-463 |
| Cow position: | chr2:24508869-24508639 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 170 |
| Conread position: | 233-463 |
| Cow position: | chr2:85009905-85009684 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 102, 71 |
| Conread position: | 233-465 |
| Cow position: | chr2:35984611-35984835 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 34 |
| Conread position: | 233-465 |
| Cow position: | chr2:41779059-41779285 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 71 |
| Conread position: | 233-465 |
| Cow position: | chr2:46566788-46566559 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 46, 163 |
| Conread position: | 233-469 |
| Cow position: | chr2:16800036-16800268 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 164 |
| Conread position: | 235-357 |
| Cow position: | chr2:34292964-34292838 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 235-362 |
| Cow position: | chr2:82293727-82293857 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 237-451 |
| Cow position: | chr2:40021140-40021348 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 126 |
| Conread position: | 237-471 |
| Cow position: | chr2:7293351-7293121 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 237-471 |
| Cow position: | chr2:46772735-46772505 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 237-488 |
| Cow position: | chr2:44972631-44972396 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 240-461 |
| Cow position: | chr2:40853286-40853072 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 251-465 |
| Cow position: | chr2:32892984-32893195 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 251-465 |
| Cow position: | chr2:35978690-35978892 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 41 |
| Conread position: | 257-464 |
| Cow position: | chr2:65721171-65721371 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 50 |
| Conread position: | 257-465 |
| Cow position: | chr2:39871621-39871419 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 140 |
| Conread position: | 264-391 |
| Cow position: | chr2:60318696-60318825 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 123 |
| Conread position: | 269-381 |
| Cow position: | chr2:52694332-52694218 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 299-462 |
| Cow position: | chr2:83145086-83145239 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 600-849 |
| Cow position: | chr2:64792740-64792489 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 716-931 |
| Cow position: | chr2:21038965-21038754 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 731-859 |
| Cow position: | chr2:6301066-6300933 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.