Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM1H090179.5 |
| Conread position: | 212-340 |
| Cow position: | chr3:24773216-24773082 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 9 |
| Conread position: | 212-361 |
| Cow position: | chr3:28485487-28485341 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-362 |
| Cow position: | chr3:3253755-3253907 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 212-446 |
| Cow position: | chr3:3251533-3251312 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 212-459 |
| Cow position: | chr3:1839703-1839460 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 212-459 |
| Cow position: | chr3:6049575-6049334 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-459 |
| Cow position: | chr3:7810274-7810508 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 212-463 |
| Cow position: | chr3:7830467-7830726 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-465 |
| Cow position: | chr3:6762327-6762585 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 212-465 |
| Cow position: | chr3:33020556-33020801 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 212-465 |
| Cow position: | chr3:49006241-49005997 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 212-465 |
| Cow position: | chr3:59205539-59205291 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 215-390 |
| Cow position: | chr3:5619324-5619156 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 216-459 |
| Cow position: | chr3:10687972-10688211 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 216-463 |
| Cow position: | chr3:11030384-11030614 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 222-381 |
| Cow position: | chr3:36783451-36783609 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 222-461 |
| Cow position: | chr3:28464670-28464902 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 222-464 |
| Cow position: | chr3:49850025-49850260 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 112, 11 |
| Conread position: | 222-465 |
| Cow position: | chr3:56308300-56308530 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 231-469 |
| Cow position: | chr3:83785640-83785882 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 10, 176 |
| Conread position: | 232-361 |
| Cow position: | chr3:81387216-81387083 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 232-463 |
| Cow position: | chr3:7812678-7812463 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 232-463 |
| Cow position: | chr3:14296268-14296051 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 232-463 |
| Cow position: | chr3:60067807-60067567 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 62, 180 |
| Conread position: | 232-463 |
| Cow position: | chr3:78548860-78549079 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 233-348 |
| Cow position: | chr3:34868301-34868182 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 233-360 |
| Cow position: | chr3:48095296-48095426 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 233-362 |
| Cow position: | chr3:28443755-28443623 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-381 |
| Cow position: | chr3:25899194-25899347 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 233-459 |
| Cow position: | chr3:65526040-65526257 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 233-463 |
| Cow position: | chr3:48091138-48091355 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 233-464 |
| Cow position: | chr3:42257317-42257083 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 233-465 |
| Cow position: | chr3:11952659-11952894 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 233-466 |
| Cow position: | chr3:28692183-28692405 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 101, 74 |
| Conread position: | 235-447 |
| Cow position: | chr3:77943882-77943680 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 55, 110 |
| Conread position: | 235-465 |
| Cow position: | chr3:2059907-2059687 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 104, 37 |
| Conread position: | 236-459 |
| Cow position: | chr3:82515718-82515935 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 237-390 |
| Cow position: | chr3:23846722-23846568 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 237-463 |
| Cow position: | chr3:22696786-22697009 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 98, 67 |
| Conread position: | 237-464 |
| Cow position: | chr3:45838893-45838668 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 162 |
| Conread position: | 240-447 |
| Cow position: | chr3:6190247-6190042 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 161 |
| Conread position: | 243-461 |
| Cow position: | chr3:85149993-85149785 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 243-465 |
| Cow position: | chr3:82508320-82508539 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 55, 112 |
| Conread position: | 244-460 |
| Cow position: | chr3:58306893-58306679 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 154, 65 |
| Conread position: | 247-463 |
| Cow position: | chr3:84919244-84919032 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 251-465 |
| Cow position: | chr3:10215651-10215445 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 60 |
| Conread position: | 315-465 |
| Cow position: | chr3:36781562-36781706 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 600-843 |
| Cow position: | chr3:9005226-9004988 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 189, 30 |
| Conread position: | 637-845 |
| Cow position: | chr3:9287185-9286976 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 23 |
| Conread position: | 720-907 |
| Cow position: | chr3:17658382-17658575 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 720-931 |
| Cow position: | chr3:16366843-16367059 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 736-925 |
| Cow position: | chr3:35958314-35958122 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 97 |
Show alignments to all cow chromosomes.