Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM1H090179.5 |
| Conread position: | 212-362 |
| Cow position: | chr5:9368675-9368827 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 212-363 |
| Cow position: | chr5:24456385-24456232 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 212-394 |
| Cow position: | chr5:2441246-2441061 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-394 |
| Cow position: | chr5:19914556-19914741 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 212-446 |
| Cow position: | chr5:64796202-64796430 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-447 |
| Cow position: | chr5:47839951-47839718 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 212-463 |
| Cow position: | chr5:23628485-23628729 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 212-463 |
| Cow position: | chr5:70705040-70705279 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 212-464 |
| Cow position: | chr5:75573351-75573104 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 212-465 |
| Cow position: | chr5:64103965-64103717 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 215-393 |
| Cow position: | chr5:39800761-39800573 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 216-390 |
| Cow position: | chr5:49920347-49920522 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 216-394 |
| Cow position: | chr5:73480300-73480122 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 216-465 |
| Cow position: | chr5:29075999-29076247 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 216-469 |
| Cow position: | chr5:17737098-17737347 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 221-468 |
| Cow position: | chr5:42183363-42183120 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 74, 13 |
| Conread position: | 222-394 |
| Cow position: | chr5:21514812-21514648 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 92, 11 |
| Conread position: | 222-463 |
| Cow position: | chr5:66106683-66106922 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 223-465 |
| Cow position: | chr5:18585038-18585276 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 232-360 |
| Cow position: | chr5:64038940-64039071 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 232-463 |
| Cow position: | chr5:60969287-60969506 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 232-465 |
| Cow position: | chr5:25896360-25896133 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 233-362 |
| Cow position: | chr5:13421004-13421136 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-396 |
| Cow position: | chr5:72939604-72939438 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 233-429 |
| Cow position: | chr5:46273321-46273131 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 133 |
| Conread position: | 233-441 |
| Cow position: | chr5:42785563-42785359 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 233-447 |
| Cow position: | chr5:48275220-48275010 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 137 |
| Conread position: | 233-459 |
| Cow position: | chr5:30204608-30204820 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 233-463 |
| Cow position: | chr5:29537035-29536797 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 178 |
| Conread position: | 233-463 |
| Cow position: | chr5:42099997-42099782 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 233-463 |
| Cow position: | chr5:47357858-47358072 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 233-464 |
| Cow position: | chr5:47996438-47996210 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 51, 162 |
| Conread position: | 233-465 |
| Cow position: | chr5:9969546-9969771 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 102, 71 |
| Conread position: | 233-465 |
| Cow position: | chr5:12219221-12219447 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 164 |
| Conread position: | 233-465 |
| Cow position: | chr5:42820257-42820483 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 233-471 |
| Cow position: | chr5:8764350-8764584 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 161 |
| Conread position: | 234-447 |
| Cow position: | chr5:37372118-37372335 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 60, 172 |
| Conread position: | 234-459 |
| Cow position: | chr5:63515831-63515616 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 235-463 |
| Cow position: | chr5:21042961-21043187 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 235-465 |
| Cow position: | chr5:47619529-47619305 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 237-360 |
| Cow position: | chr5:67962450-67962575 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 237-471 |
| Cow position: | chr5:24888652-24888881 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 240-471 |
| Cow position: | chr5:48135725-48135946 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 244-470 |
| Cow position: | chr5:18657605-18657830 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 159 |
| Conread position: | 244-481 |
| Cow position: | chr5:47991630-47991394 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 158 |
| Conread position: | 247-394 |
| Cow position: | chr5:18775541-18775397 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 600-845 |
| Cow position: | chr5:39424021-39423787 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 197, 60 |
| Conread position: | 600-857 |
| Cow position: | chr5:43791903-43792136 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 607-931 |
| Cow position: | chr5:41519320-41518992 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 287 |
| Conread position: | 720-868 |
| Cow position: | chr5:48219728-48219878 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 731-871 |
| Cow position: | chr5:43891508-43891362 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 731-931 |
| Cow position: | chr5:9574119-9573913 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 6, 78 |
Show alignments to all cow chromosomes.