Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM1H090179.5 |
| Conread position: | 212-360 |
| Cow position: | chr9:8596428-8596578 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 212-392 |
| Cow position: | chr9:40440957-40440780 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 212-394 |
| Cow position: | chr9:5380924-5381104 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 124, 21 |
| Conread position: | 212-452 |
| Cow position: | chr9:16619188-16618956 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 212-461 |
| Cow position: | chr9:1387734-1387977 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 212-463 |
| Cow position: | chr9:3436160-3435919 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 212-463 |
| Cow position: | chr9:6260285-6260536 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 216-447 |
| Cow position: | chr9:25541417-25541635 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 216-463 |
| Cow position: | chr9:4968500-4968268 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 221-464 |
| Cow position: | chr9:42252579-42252821 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 221-465 |
| Cow position: | chr9:37289704-37289949 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 222-363 |
| Cow position: | chr9:23133573-23133433 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 222-465 |
| Cow position: | chr9:58569561-58569329 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 231-465 |
| Cow position: | chr9:16863820-16863590 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 146 |
| Conread position: | 232-362 |
| Cow position: | chr9:25032158-25032025 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 232-470 |
| Cow position: | chr9:7448276-7448039 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 52, 171 |
| Conread position: | 233-361 |
| Cow position: | chr9:1097516-1097647 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-361 |
| Cow position: | chr9:49420902-49421034 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 233-380 |
| Cow position: | chr9:61574364-61574512 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 233-394 |
| Cow position: | chr9:8321284-8321120 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 233-446 |
| Cow position: | chr9:7615849-7616059 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 61, 167 |
| Conread position: | 233-463 |
| Cow position: | chr9:41026879-41027108 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 171 |
| Conread position: | 233-464 |
| Cow position: | chr9:1383491-1383267 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 233-465 |
| Cow position: | chr9:5479426-5479664 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 62, 205 |
| Conread position: | 233-465 |
| Cow position: | chr9:8627415-8627187 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 65, 165 |
| Conread position: | 233-469 |
| Cow position: | chr9:27385664-27385897 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 170 |
| Conread position: | 233-471 |
| Cow position: | chr9:28536294-28536062 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 234-389 |
| Cow position: | chr9:30200160-30200004 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 234-394 |
| Cow position: | chr9:22441162-22441005 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 235-464 |
| Cow position: | chr9:15993205-15993433 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 167 |
| Conread position: | 237-340 |
| Cow position: | chr9:48193672-48193777 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 237-446 |
| Cow position: | chr9:22726318-22726522 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 240-464 |
| Cow position: | chr9:36712652-36712873 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 241-392 |
| Cow position: | chr9:34047733-34047889 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 241-464 |
| Cow position: | chr9:33569588-33569364 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 716-871 |
| Cow position: | chr9:24593665-24593825 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.