Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM1H090179.5 |
| Conread position: | 212-452 |
| Cow position: | chrX:44117278-44117042 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 212-463 |
| Cow position: | chrX:45892984-45893229 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 216-394 |
| Cow position: | chrX:48016081-48015901 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 19 |
| Conread position: | 216-463 |
| Cow position: | chrX:39861026-39861262 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 216-463 |
| Cow position: | chrX:47336305-47336063 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 216-479 |
| Cow position: | chrX:47331714-47331454 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 222-463 |
| Cow position: | chrX:45769707-45769473 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 222-464 |
| Cow position: | chrX:30036008-30035768 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 233-360 |
| Cow position: | chrX:42496886-42497012 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 233-361 |
| Cow position: | chrX:5414513-5414644 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 233-446 |
| Cow position: | chrX:36090454-36090662 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 233-463 |
| Cow position: | chrX:31203923-31204141 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 133 |
| Conread position: | 233-464 |
| Cow position: | chrX:37075004-37074784 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 233-465 |
| Cow position: | chrX:29919841-29919610 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 59, 167 |
| Conread position: | 233-471 |
| Cow position: | chrX:48265137-48264903 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 234-362 |
| Cow position: | chrX:42416902-42417033 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 234-463 |
| Cow position: | chrX:42570652-42570435 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 237-465 |
| Cow position: | chrX:12649120-12649346 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 44, 164 |
| Conread position: | 237-468 |
| Cow position: | chrX:32978891-32978661 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 63, 164 |
| Conread position: | 237-469 |
| Cow position: | chrX:25306723-25306497 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 240-394 |
| Cow position: | chrX:42467430-42467273 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 240-464 |
| Cow position: | chrX:26463660-26463883 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 169 |
| Conread position: | 240-465 |
| Cow position: | chrX:40598598-40598824 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 164 |
| Conread position: | 240-469 |
| Cow position: | chrX:39528469-39528694 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 159 |
| Conread position: | 241-394 |
| Cow position: | chrX:15267291-15267132 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 243-463 |
| Cow position: | chrX:24394519-24394727 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 123 |
| Conread position: | 244-458 |
| Cow position: | chrX:26411689-26411903 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 137 |
| Conread position: | 244-470 |
| Cow position: | chrX:9515117-9514891 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 160 |
| Conread position: | 568-931 |
| Cow position: | chrX:21382806-21383172 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 206, 15 |
| Conread position: | 600-859 |
| Cow position: | chrX:40713552-40713812 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 132 |
| Conread position: | 600-903 |
| Cow position: | chrX:40539148-40538837 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 134 |
Show alignments to all cow chromosomes.