Cow genome map
| Conread name: | Ss1.1-Ova2-C0003276_B09.5 |
| Conread position: | 1-176 |
| Cow position: | chr5:20227323-20227148 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-187 |
| Cow position: | chr5:20330284-20330099 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 2-176 |
| Cow position: | chr5:20093808-20093633 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 2-189 |
| Cow position: | chr5:20116496-20116309 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 5, 183 |
| Conread position: | 3-176 |
| Cow position: | chr5:19570201-19570028 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 149 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-176 |
| Cow position: | chr5:19881422-19881249 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-176 |
| Cow position: | chr5:19897629-19897456 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-176 |
| Cow position: | chr5:19986799-19986626 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-176 |
| Cow position: | chr5:20005597-20005424 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-176 |
| Cow position: | chr5:20259055-20258882 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-176 |
| Cow position: | chr5:20314708-20314535 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-185 |
| Cow position: | chr5:20281242-20281060 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-191 |
| Cow position: | chr5:20023228-20023040 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-170 |
| Cow position: | chr5:19784672-19784506 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-188 |
| Cow position: | chr5:20374639-20374455 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-194 |
| Cow position: | chr5:20298313-20298125 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 5-170 |
| Cow position: | chr5:19690127-19690292 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-170 |
| Cow position: | chr5:19830902-19830737 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-176 |
| Cow position: | chr5:19818679-19818850 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-186 |
| Cow position: | chr5:19679066-19679242 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 95 |
| Conread position: | 6-170 |
| Cow position: | chr5:19755726-19755562 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-170 |
| Cow position: | chr5:19772151-19772315 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-176 |
| Cow position: | chr5:19849086-19848916 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-176 |
| Cow position: | chr5:20074344-20074174 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 141 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-176 |
| Cow position: | chr5:20131412-20131242 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-176 |
| Cow position: | chr5:20191493-20191323 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-191 |
| Cow position: | chr5:19864093-19863910 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 10-176 |
| Cow position: | chr5:20057252-20057086 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 139 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-176 |
| Cow position: | chr5:19746407-19746565 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 135 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 51-176 |
| Cow position: | chr5:24472614-24472739 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-451 |
| Cow position: | chr5:20373733-20373628 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.