Cow genome map
| Conread name: | Ss1.1-Pig1-34P23.5 |
| Conread position: | 440-612 |
| Cow position: | chr24:22129427-22129601 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 446-594 |
| Cow position: | chr24:11208778-11208627 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 448-600 |
| Cow position: | chr24:28510999-28510842 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 450-610 |
| Cow position: | chr24:29984785-29984945 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 452-607 |
| Cow position: | chr24:18302919-18302755 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 454-610 |
| Cow position: | chr24:30236076-30235909 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 457-610 |
| Cow position: | chr24:5142142-5141981 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 457-610 |
| Cow position: | chr24:21656611-21656445 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 457-610 |
| Cow position: | chr24:40811869-40811716 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 65 |
| Conread position: | 457-610 |
| Cow position: | chr24:43028127-43028291 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 458-610 |
| Cow position: | chr24:7275896-7275742 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 147 |
| Conread position: | 458-610 |
| Cow position: | chr24:13948321-13948159 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 458-610 |
| Cow position: | chr24:24490827-24490978 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 458-612 |
| Cow position: | chr24:28303163-28303318 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 459-596 |
| Cow position: | chr24:29849224-29849366 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 461-586 |
| Cow position: | chr24:42792546-42792416 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 461-609 |
| Cow position: | chr24:6488399-6488248 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 461-610 |
| Cow position: | chr24:39523255-39523410 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 462-608 |
| Cow position: | chr24:30325588-30325740 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 462-609 |
| Cow position: | chr24:28255869-28256019 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 462-610 |
| Cow position: | chr24:30483748-30483902 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 463-610 |
| Cow position: | chr24:3412873-3412722 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 463-610 |
| Cow position: | chr24:24091141-24091301 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 463-610 |
| Cow position: | chr24:37823716-37823566 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 465-610 |
| Cow position: | chr24:230471-230322 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 465-610 |
| Cow position: | chr24:25970893-25971037 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 466-608 |
| Cow position: | chr24:19187122-19186978 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 467-608 |
| Cow position: | chr24:27844344-27844487 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 467-610 |
| Cow position: | chr24:22133355-22133210 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 467-612 |
| Cow position: | chr24:42688031-42687882 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 83 |
| Conread position: | 468-610 |
| Cow position: | chr24:6887196-6887047 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 468-610 |
| Cow position: | chr24:41926004-41925861 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 469-610 |
| Cow position: | chr24:7757955-7757811 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 469-610 |
| Cow position: | chr24:27719343-27719488 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 469-610 |
| Cow position: | chr24:28234228-28234081 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 470-607 |
| Cow position: | chr24:27607925-27608064 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 471-605 |
| Cow position: | chr24:31160856-31160994 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 471-610 |
| Cow position: | chr24:29539743-29539891 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 472-606 |
| Cow position: | chr24:20364234-20364367 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 472-609 |
| Cow position: | chr24:34390456-34390316 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 472-610 |
| Cow position: | chr24:32890862-32891005 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 473-610 |
| Cow position: | chr24:1269960-1269822 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 473-610 |
| Cow position: | chr24:2402194-2402329 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 53 |
| Conread position: | 473-610 |
| Cow position: | chr24:18731925-18732063 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 477-607 |
| Cow position: | chr24:175329-175453 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 477-610 |
| Cow position: | chr24:17104393-17104531 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 477-610 |
| Cow position: | chr24:21834783-21834920 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 101 |
| Conread position: | 477-610 |
| Cow position: | chr24:27940449-27940583 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 480-608 |
| Cow position: | chr24:33372722-33372593 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 481-608 |
| Cow position: | chr24:37974808-37974940 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 481-610 |
| Cow position: | chr24:18474554-18474690 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 481-610 |
| Cow position: | chr24:27412940-27413072 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 482-608 |
| Cow position: | chr24:39849718-39849848 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 482-610 |
| Cow position: | chr24:17938855-17938731 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 73 |
| Conread position: | 483-600 |
| Cow position: | chr24:42175698-42175575 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 483-610 |
| Cow position: | chr24:5360884-5360755 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 484-610 |
| Cow position: | chr24:2223049-2223173 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 485-610 |
| Cow position: | chr24:29524219-29524346 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 485-610 |
| Cow position: | chr24:30313858-30313987 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 486-610 |
| Cow position: | chr24:24540322-24540452 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 489-610 |
| Cow position: | chr24:25122504-25122380 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 493-610 |
| Cow position: | chr24:31816738-31816617 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 495-609 |
| Cow position: | chr24:25231163-25231278 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 72 |
Show alignments to all cow chromosomes.