Cow genome map
| Conread name: | Ss1.1-Pig1-34P23.5 |
| Conread position: | 439-610 |
| Cow position: | chr28:13269964-13269795 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 87, 116 |
| Conread position: | 454-610 |
| Cow position: | chr28:2279372-2279528 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 454-610 |
| Cow position: | chr28:7350884-7350722 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 454-610 |
| Cow position: | chr28:17943954-17943798 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 454-610 |
| Cow position: | chr28:21868688-21868525 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 456-608 |
| Cow position: | chr28:10140358-10140513 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 457-593 |
| Cow position: | chr28:3725980-3726124 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 457-609 |
| Cow position: | chr28:16918947-16919100 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 458-589 |
| Cow position: | chr28:8283472-8283609 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 458-610 |
| Cow position: | chr28:3257219-3257056 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 458-610 |
| Cow position: | chr28:6301313-6301149 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 458-610 |
| Cow position: | chr28:7750795-7750948 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 458-610 |
| Cow position: | chr28:11866441-11866597 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 459-609 |
| Cow position: | chr28:8304468-8304316 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 62, 95 |
| Conread position: | 459-610 |
| Cow position: | chr28:777901-777743 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 459-610 |
| Cow position: | chr28:20125006-20124853 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 461-591 |
| Cow position: | chr28:4375402-4375536 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 461-608 |
| Cow position: | chr28:22170058-22170210 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 461-610 |
| Cow position: | chr28:3678583-3678430 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 461-610 |
| Cow position: | chr28:4866354-4866505 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 108 |
| Conread position: | 461-610 |
| Cow position: | chr28:9705881-9705718 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 462-609 |
| Cow position: | chr28:5204408-5204264 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 57 |
| Conread position: | 462-610 |
| Cow position: | chr28:3445257-3445414 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 462-610 |
| Cow position: | chr28:4101735-4101590 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 98, 64 |
| Conread position: | 462-610 |
| Cow position: | chr28:5255094-5254942 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 462-610 |
| Cow position: | chr28:17948894-17949045 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 91 |
| Conread position: | 463-608 |
| Cow position: | chr28:4876660-4876512 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 464-610 |
| Cow position: | chr28:4884032-4884185 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 464-611 |
| Cow position: | chr28:11305415-11305566 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 465-610 |
| Cow position: | chr28:11828739-11828894 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 465-612 |
| Cow position: | chr28:21845172-21845023 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 466-606 |
| Cow position: | chr28:17740044-17739894 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 466-609 |
| Cow position: | chr28:27787784-27787635 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 466-610 |
| Cow position: | chr28:11426329-11426473 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 467-612 |
| Cow position: | chr28:8396543-8396401 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 468-600 |
| Cow position: | chr28:19395079-19394946 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 468-610 |
| Cow position: | chr28:22371457-22371599 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 468-611 |
| Cow position: | chr28:23724253-23724392 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 469-600 |
| Cow position: | chr28:4071174-4071044 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 469-609 |
| Cow position: | chr28:2737310-2737449 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 469-610 |
| Cow position: | chr28:7131875-7132020 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 469-610 |
| Cow position: | chr28:9636241-9636389 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 469-610 |
| Cow position: | chr28:29850606-29850747 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 469-612 |
| Cow position: | chr28:11584993-11585136 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 470-610 |
| Cow position: | chr28:9109425-9109284 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 470-610 |
| Cow position: | chr28:19564019-19564160 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 100 |
| Conread position: | 471-610 |
| Cow position: | chr28:10978051-10977910 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 471-610 |
| Cow position: | chr28:26960699-26960841 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 472-610 |
| Cow position: | chr28:22813462-22813326 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 472-611 |
| Cow position: | chr28:8681225-8681363 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 473-611 |
| Cow position: | chr28:11422607-11422749 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 473-612 |
| Cow position: | chr28:5805874-5805733 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 473-612 |
| Cow position: | chr28:8787751-8787605 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 477-608 |
| Cow position: | chr28:3492579-3492714 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 477-609 |
| Cow position: | chr28:8936357-8936219 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 108 |
| Conread position: | 477-610 |
| Cow position: | chr28:4013291-4013152 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 477-610 |
| Cow position: | chr28:4016731-4016599 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 477-610 |
| Cow position: | chr28:7618952-7619082 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 477-610 |
| Cow position: | chr28:22500298-22500432 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 477-610 |
| Cow position: | chr28:29416517-29416649 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 477-612 |
| Cow position: | chr28:4182209-4182067 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 478-610 |
| Cow position: | chr28:24238277-24238409 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 478-611 |
| Cow position: | chr28:32358312-32358174 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 479-611 |
| Cow position: | chr28:10763094-10762961 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 481-610 |
| Cow position: | chr28:4588518-4588386 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 481-610 |
| Cow position: | chr28:30902325-30902194 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 481-612 |
| Cow position: | chr28:4027265-4027397 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 481-612 |
| Cow position: | chr28:10891122-10891249 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 482-606 |
| Cow position: | chr28:3746400-3746274 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 87 |
| Conread position: | 482-610 |
| Cow position: | chr28:21263357-21263225 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 482-610 |
| Cow position: | chr28:26867951-26868083 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 484-608 |
| Cow position: | chr28:10890541-10890665 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 485-610 |
| Cow position: | chr28:24082470-24082338 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 493-600 |
| Cow position: | chr28:21673257-21673149 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 493-610 |
| Cow position: | chr28:4100572-4100691 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 497-610 |
| Cow position: | chr28:16879756-16879641 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 72 |
Show alignments to all cow chromosomes.