Cow genome map
| Conread name: | Ss1.1-Pig1-34P23.5 |
| Conread position: | 450-608 |
| Cow position: | chr29:5063372-5063208 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 451-602 |
| Cow position: | chr29:659510-659351 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 451-610 |
| Cow position: | chr29:36531090-36530928 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 456-610 |
| Cow position: | chr29:10839162-10839002 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 457-610 |
| Cow position: | chr29:36781088-36781243 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 63, 112 |
| Conread position: | 457-612 |
| Cow position: | chr29:22729787-22729626 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 458-610 |
| Cow position: | chr29:7290991-7290837 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 458-610 |
| Cow position: | chr29:19949526-19949368 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 458-610 |
| Cow position: | chr29:22162043-22162188 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 458-610 |
| Cow position: | chr29:40112600-40112443 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 458-612 |
| Cow position: | chr29:1008043-1007880 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 460-599 |
| Cow position: | chr29:570625-570767 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 114 |
| Conread position: | 460-610 |
| Cow position: | chr29:31929206-31929048 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 461-608 |
| Cow position: | chr29:39038051-39038206 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 461-609 |
| Cow position: | chr29:9709911-9709757 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 461-610 |
| Cow position: | chr29:4874673-4874818 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 461-610 |
| Cow position: | chr29:14761666-14761515 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 462-608 |
| Cow position: | chr29:936420-936270 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 462-610 |
| Cow position: | chr29:17718815-17718958 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 463-610 |
| Cow position: | chr29:396618-396467 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 463-610 |
| Cow position: | chr29:23678916-23678770 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 463-610 |
| Cow position: | chr29:35501449-35501593 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 464-610 |
| Cow position: | chr29:22613636-22613491 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 464-610 |
| Cow position: | chr29:34359609-34359760 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 465-608 |
| Cow position: | chr29:22776289-22776142 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 465-610 |
| Cow position: | chr29:25669297-25669155 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 61, 90 |
| Conread position: | 465-610 |
| Cow position: | chr29:26275815-26275667 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 465-610 |
| Cow position: | chr29:31593945-31594085 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 465-610 |
| Cow position: | chr29:36546567-36546721 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 466-610 |
| Cow position: | chr29:29308369-29308510 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 86 |
| Conread position: | 466-610 |
| Cow position: | chr29:40117779-40117632 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 467-610 |
| Cow position: | chr29:7414706-7414563 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 467-610 |
| Cow position: | chr29:20770556-20770405 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 467-612 |
| Cow position: | chr29:22736566-22736422 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 467-612 |
| Cow position: | chr29:32215916-32215767 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 468-610 |
| Cow position: | chr29:4070834-4070685 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 468-610 |
| Cow position: | chr29:12890887-12890743 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 469-610 |
| Cow position: | chr29:24660887-24660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 470-610 |
| Cow position: | chr29:41112681-41112820 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 471-610 |
| Cow position: | chr29:29769146-29769290 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 473-608 |
| Cow position: | chr29:40791504-40791366 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 473-610 |
| Cow position: | chr29:33143151-33143293 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 474-610 |
| Cow position: | chr29:25737215-25737353 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 476-600 |
| Cow position: | chr29:39639043-39638915 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 477-599 |
| Cow position: | chr29:31378286-31378164 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 45 |
| Conread position: | 477-610 |
| Cow position: | chr29:7443865-7444000 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 477-610 |
| Cow position: | chr29:9378837-9378698 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 477-610 |
| Cow position: | chr29:11887463-11887329 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 477-610 |
| Cow position: | chr29:22028759-22028894 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 478-607 |
| Cow position: | chr29:38010646-38010509 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 478-610 |
| Cow position: | chr29:19363909-19363771 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 478-610 |
| Cow position: | chr29:33550972-33551104 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 479-610 |
| Cow position: | chr29:17110153-17110018 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 479-610 |
| Cow position: | chr29:36357328-36357187 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 492-610 |
| Cow position: | chr29:17804717-17804595 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 498-610 |
| Cow position: | chr29:23825031-23825149 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.