Cow genome map
| Conread name: | Ss1.1-Pig1-34P23.5 |
| Conread position: | 446-610 |
| Cow position: | chr6:32866949-32867116 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 453-608 |
| Cow position: | chr6:52478146-52478306 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 454-608 |
| Cow position: | chr6:47520319-47520158 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 455-610 |
| Cow position: | chr6:53792213-53792366 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 102 |
| Conread position: | 456-607 |
| Cow position: | chr6:65871294-65871142 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 457-610 |
| Cow position: | chr6:3351293-3351131 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 457-610 |
| Cow position: | chr6:38640493-38640336 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 458-607 |
| Cow position: | chr6:21293236-21293391 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 458-610 |
| Cow position: | chr6:5601962-5601801 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 458-610 |
| Cow position: | chr6:23938313-23938163 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 458-610 |
| Cow position: | chr6:42035035-42034875 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 458-612 |
| Cow position: | chr6:41226585-41226732 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 459-610 |
| Cow position: | chr6:1941573-1941729 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 459-610 |
| Cow position: | chr6:16091159-16091006 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 459-610 |
| Cow position: | chr6:17414189-17414342 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 75 |
| Conread position: | 460-610 |
| Cow position: | chr6:35984874-35985034 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 461-594 |
| Cow position: | chr6:8688591-8688728 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 461-610 |
| Cow position: | chr6:12761541-12761381 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 461-610 |
| Cow position: | chr6:44636255-44636407 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 462-606 |
| Cow position: | chr6:24186344-24186491 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 462-610 |
| Cow position: | chr6:62849179-62849028 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 463-607 |
| Cow position: | chr6:32287888-32287740 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 463-607 |
| Cow position: | chr6:67069558-67069705 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 463-610 |
| Cow position: | chr6:26155402-26155251 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 463-611 |
| Cow position: | chr6:41657522-41657369 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 464-610 |
| Cow position: | chr6:21470176-21470326 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 464-610 |
| Cow position: | chr6:50577771-50577623 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 464-610 |
| Cow position: | chr6:59602959-59603105 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 103 |
| Conread position: | 465-610 |
| Cow position: | chr6:46558310-46558160 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 465-610 |
| Cow position: | chr6:60273755-60273906 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 465-612 |
| Cow position: | chr6:1475592-1475446 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 465-612 |
| Cow position: | chr6:53546283-53546136 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 465-612 |
| Cow position: | chr6:60850953-60850801 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 466-606 |
| Cow position: | chr6:23696248-23696107 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 94, 52 |
| Conread position: | 466-608 |
| Cow position: | chr6:2078562-2078710 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 466-610 |
| Cow position: | chr6:15300586-15300730 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 466-610 |
| Cow position: | chr6:34423206-34423356 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 466-610 |
| Cow position: | chr6:54406551-54406697 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 466-610 |
| Cow position: | chr6:60143945-60144095 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 466-612 |
| Cow position: | chr6:35341933-35342079 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 52 |
| Conread position: | 467-609 |
| Cow position: | chr6:12623763-12623617 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 116 |
| Conread position: | 467-610 |
| Cow position: | chr6:693892-694044 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 467-610 |
| Cow position: | chr6:24468146-24468293 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 467-612 |
| Cow position: | chr6:67574643-67574488 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 468-609 |
| Cow position: | chr6:59759422-59759274 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 468-610 |
| Cow position: | chr6:43770648-43770796 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 468-612 |
| Cow position: | chr6:37994457-37994310 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 469-610 |
| Cow position: | chr6:4699956-4699810 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 469-610 |
| Cow position: | chr6:44194305-44194446 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 123 |
| Conread position: | 469-612 |
| Cow position: | chr6:45633744-45633891 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 127 |
| Conread position: | 470-595 |
| Cow position: | chr6:48661125-48661255 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 101 |
| Conread position: | 470-610 |
| Cow position: | chr6:67451122-67451268 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 471-610 |
| Cow position: | chr6:7291560-7291418 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 471-610 |
| Cow position: | chr6:34463341-34463485 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 471-612 |
| Cow position: | chr6:55282043-55282192 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 472-608 |
| Cow position: | chr6:58725615-58725474 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 114 |
| Conread position: | 472-610 |
| Cow position: | chr6:46466066-46465924 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 472-610 |
| Cow position: | chr6:53460323-53460464 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 474-610 |
| Cow position: | chr6:66058463-66058605 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 474-612 |
| Cow position: | chr6:143132-143274 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 476-595 |
| Cow position: | chr6:60674075-60673952 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 477-607 |
| Cow position: | chr6:48097360-48097493 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 477-609 |
| Cow position: | chr6:32006213-32006351 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 477-610 |
| Cow position: | chr6:29485326-29485186 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 477-610 |
| Cow position: | chr6:49421553-49421689 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 53 |
| Conread position: | 477-610 |
| Cow position: | chr6:53024568-53024701 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 478-609 |
| Cow position: | chr6:67451422-67451550 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 478-610 |
| Cow position: | chr6:3937029-3936885 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 478-610 |
| Cow position: | chr6:30024119-30023988 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 478-610 |
| Cow position: | chr6:48278653-48278786 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 479-610 |
| Cow position: | chr6:17068414-17068545 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 480-610 |
| Cow position: | chr6:21346913-21347048 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 480-610 |
| Cow position: | chr6:57320358-57320495 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 481-610 |
| Cow position: | chr6:45690380-45690507 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 481-610 |
| Cow position: | chr6:50504695-50504559 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 481-612 |
| Cow position: | chr6:47672913-47673047 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 482-610 |
| Cow position: | chr6:10105745-10105876 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 482-610 |
| Cow position: | chr6:36537125-36537258 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 483-608 |
| Cow position: | chr6:61110019-61109891 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 483-610 |
| Cow position: | chr6:21083304-21083438 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 483-610 |
| Cow position: | chr6:38033095-38032960 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 487-606 |
| Cow position: | chr6:39358110-39358234 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 489-610 |
| Cow position: | chr6:63182516-63182391 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.