Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 335-577 |
| Cow position: | chr12:9450338-9450088 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 16, 214 |
| Conread position: | 351-520 |
| Cow position: | chr12:31209030-31209196 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 353-491 |
| Cow position: | chr12:25248259-25248392 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 353-577 |
| Cow position: | chr12:36304129-36304365 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 84 |
| Conread position: | 353-587 |
| Cow position: | chr12:39338092-39338328 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 355-507 |
| Cow position: | chr12:36948841-36948994 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 355-520 |
| Cow position: | chr12:36249817-36249642 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-587 |
| Cow position: | chr12:4348034-4347797 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-587 |
| Cow position: | chr12:11352520-11352287 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 30, 212 |
| Conread position: | 355-589 |
| Cow position: | chr12:25901718-25901489 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 355-591 |
| Cow position: | chr12:27093681-27093449 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 355-591 |
| Cow position: | chr12:48436763-48436507 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-598 |
| Cow position: | chr12:9746530-9746768 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 355-598 |
| Cow position: | chr12:19645588-19645822 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 355-600 |
| Cow position: | chr12:10607476-10607714 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 356-578 |
| Cow position: | chr12:31805817-31806037 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 356-584 |
| Cow position: | chr12:28541763-28541996 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 356-590 |
| Cow position: | chr12:6643760-6643993 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 356-598 |
| Cow position: | chr12:17990203-17990429 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 357-592 |
| Cow position: | chr12:10202291-10202064 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 357-592 |
| Cow position: | chr12:16072187-16072416 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 357-600 |
| Cow position: | chr12:10440743-10440975 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 205, 50 |
| Conread position: | 358-558 |
| Cow position: | chr12:10798581-10798377 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 358-589 |
| Cow position: | chr12:3896595-3896363 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 359-587 |
| Cow position: | chr12:8909178-8908952 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 366-596 |
| Cow position: | chr12:20097154-20097390 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 367-597 |
| Cow position: | chr12:15033995-15033769 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 111 |
| Conread position: | 370-579 |
| Cow position: | chr12:27437656-27437446 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 6, 89 |
| Conread position: | 375-596 |
| Cow position: | chr12:42466818-42467038 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 83 |
| Conread position: | 375-598 |
| Cow position: | chr12:10760864-10760642 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 110, 86 |
| Conread position: | 376-591 |
| Cow position: | chr12:38748294-38748093 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 377-590 |
| Cow position: | chr12:10769502-10769710 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 377-600 |
| Cow position: | chr12:29852566-29852334 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 74, 193 |
| Conread position: | 382-596 |
| Cow position: | chr12:2020049-2020267 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 212 |
| Conread position: | 382-596 |
| Cow position: | chr12:19509228-19509438 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 383-576 |
| Cow position: | chr12:34133403-34133207 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 389-595 |
| Cow position: | chr12:13575278-13575485 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 105, 83 |
| Conread position: | 397-576 |
| Cow position: | chr12:36324119-36323951 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 397-576 |
| Cow position: | chr12:36409671-36409503 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 397-583 |
| Cow position: | chr12:36349619-36349444 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 397-599 |
| Cow position: | chr12:41732158-41732350 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 401-598 |
| Cow position: | chr12:14236350-14236544 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 404-554 |
| Cow position: | chr12:48359657-48359806 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 405-596 |
| Cow position: | chr12:7089181-7088980 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 406-598 |
| Cow position: | chr12:39827388-39827581 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 413-596 |
| Cow position: | chr12:4734006-4734184 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 416-599 |
| Cow position: | chr12:9439989-9439806 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 419-596 |
| Cow position: | chr12:20174680-20174851 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 432-587 |
| Cow position: | chr12:12869708-12869861 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 434-598 |
| Cow position: | chr12:1205781-1205619 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 442-598 |
| Cow position: | chr12:21064745-21064592 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 447-592 |
| Cow position: | chr12:37898423-37898281 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 461-598 |
| Cow position: | chr12:3067077-3067214 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 6 |
| Conread position: | 463-587 |
| Cow position: | chr12:37806215-37806343 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 463-596 |
| Cow position: | chr12:33277953-33278088 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 126 |
| Conread position: | 463-600 |
| Cow position: | chr12:12982819-12982679 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 464-600 |
| Cow position: | chr12:22026976-22027115 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 466-596 |
| Cow position: | chr12:37510595-37510462 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 473-597 |
| Cow position: | chr12:4837133-4837256 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 46 |
Show alignments to all cow chromosomes.