Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 338-587 |
| Cow position: | chr14:13361388-13361628 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 339-595 |
| Cow position: | chr14:19542363-19542619 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 350-544 |
| Cow position: | chr14:43844702-43844896 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 351-599 |
| Cow position: | chr14:35434842-35435084 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 352-559 |
| Cow position: | chr14:9921072-9920863 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 353-566 |
| Cow position: | chr14:34059996-34060200 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 5, 44 |
| Conread position: | 354-590 |
| Cow position: | chr14:38688544-38688767 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 354-598 |
| Cow position: | chr14:20642954-20643193 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 164, 202 |
| Conread position: | 354-599 |
| Cow position: | chr14:15197968-15198226 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 355-491 |
| Cow position: | chr14:18292226-18292095 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 355-586 |
| Cow position: | chr14:8257404-8257635 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 355-591 |
| Cow position: | chr14:18161275-18161491 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 355-591 |
| Cow position: | chr14:28574919-28574684 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 355-595 |
| Cow position: | chr14:35734955-35735206 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 355-596 |
| Cow position: | chr14:25952560-25952792 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 355-596 |
| Cow position: | chr14:40752975-40753208 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 355-598 |
| Cow position: | chr14:48937547-48937305 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 355-598 |
| Cow position: | chr14:49645234-49644987 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 355-599 |
| Cow position: | chr14:35448750-35449005 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 356-527 |
| Cow position: | chr14:43380371-43380196 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 356-587 |
| Cow position: | chr14:20940239-20940018 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 356-590 |
| Cow position: | chr14:33099153-33098915 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 357-507 |
| Cow position: | chr14:10874024-10873867 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 357-599 |
| Cow position: | chr14:33080078-33080316 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 123, 26 |
| Conread position: | 358-574 |
| Cow position: | chr14:12952108-12952328 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 358-590 |
| Cow position: | chr14:45611414-45611165 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 359-505 |
| Cow position: | chr14:19090338-19090192 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 361-586 |
| Cow position: | chr14:7600174-7600398 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 361-591 |
| Cow position: | chr14:44204965-44205198 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 361-593 |
| Cow position: | chr14:15239119-15239355 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 363-544 |
| Cow position: | chr14:16715558-16715370 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 364-592 |
| Cow position: | chr14:25346461-25346238 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 367-592 |
| Cow position: | chr14:35303959-35304181 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 10 |
| Conread position: | 375-554 |
| Cow position: | chr14:50015306-50015127 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 375-578 |
| Cow position: | chr14:43484720-43484517 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 375-591 |
| Cow position: | chr14:38224797-38224581 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 120, 78 |
| Conread position: | 379-511 |
| Cow position: | chr14:37643806-37643672 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 379-595 |
| Cow position: | chr14:28690184-28689985 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 382-587 |
| Cow position: | chr14:22000126-21999928 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 114, 154 |
| Conread position: | 383-596 |
| Cow position: | chr14:43693812-43694019 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 69 |
| Conread position: | 388-561 |
| Cow position: | chr14:40956619-40956794 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 398-561 |
| Cow position: | chr14:18030492-18030655 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 155 |
| Conread position: | 398-590 |
| Cow position: | chr14:34927672-34927866 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 60 |
| Conread position: | 401-594 |
| Cow position: | chr14:38240505-38240317 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 181, 48 |
| Conread position: | 408-590 |
| Cow position: | chr14:33999501-33999677 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 413-592 |
| Cow position: | chr14:20767699-20767872 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 45 |
| Conread position: | 417-579 |
| Cow position: | chr14:32761151-32761310 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 420-596 |
| Cow position: | chr14:50095167-50094990 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 144 |
| Conread position: | 420-597 |
| Cow position: | chr14:27262474-27262290 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 427-590 |
| Cow position: | chr14:4942602-4942762 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 431-595 |
| Cow position: | chr14:38542876-38542714 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 441-587 |
| Cow position: | chr14:29112794-29112941 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 450-599 |
| Cow position: | chr14:36960100-36959945 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 453-596 |
| Cow position: | chr14:19142722-19142858 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 463-588 |
| Cow position: | chr14:37138397-37138522 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-595 |
| Cow position: | chr14:10156655-10156519 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 463-596 |
| Cow position: | chr14:44454413-44454279 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 464-595 |
| Cow position: | chr14:9051197-9051062 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 465-600 |
| Cow position: | chr14:18984939-18985079 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 466-595 |
| Cow position: | chr14:23060112-23059980 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.