Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 1-598 |
| Cow position: | chr15:38635310-38634706 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 351-591 |
| Cow position: | chr15:15786772-15786533 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 353-565 |
| Cow position: | chr15:38818357-38818570 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 23, 211 |
| Conread position: | 353-598 |
| Cow position: | chr15:3582046-3581797 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 128, 8 |
| Conread position: | 353-598 |
| Cow position: | chr15:18834539-18834783 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 354-578 |
| Cow position: | chr15:1233658-1233432 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 354-578 |
| Cow position: | chr15:1241008-1240782 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 354-598 |
| Cow position: | chr15:12300747-12300500 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 355-577 |
| Cow position: | chr15:45678809-45679025 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 355-585 |
| Cow position: | chr15:3539332-3539551 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 355-587 |
| Cow position: | chr15:34085476-34085697 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 146, 22 |
| Conread position: | 355-588 |
| Cow position: | chr15:19127028-19127265 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 355-589 |
| Cow position: | chr15:31883035-31883271 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 355-591 |
| Cow position: | chr15:3593442-3593202 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 355-591 |
| Cow position: | chr15:8463400-8463164 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 355-592 |
| Cow position: | chr15:19404647-19404409 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 355-592 |
| Cow position: | chr15:35739897-35740142 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 355-595 |
| Cow position: | chr15:40991509-40991750 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 110 |
| Conread position: | 355-597 |
| Cow position: | chr15:30822538-30822775 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 355-598 |
| Cow position: | chr15:48964025-48963788 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 145, 21 |
| Conread position: | 355-598 |
| Cow position: | chr15:49302104-49301854 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 355-599 |
| Cow position: | chr15:8062338-8062579 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 356-576 |
| Cow position: | chr15:32325402-32325173 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 357-590 |
| Cow position: | chr15:9735016-9734775 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 358-587 |
| Cow position: | chr15:53046226-53046447 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 361-596 |
| Cow position: | chr15:3543454-3543684 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 361-596 |
| Cow position: | chr15:13691337-13691566 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 361-598 |
| Cow position: | chr15:40845279-40845055 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 8, 96 |
| Conread position: | 362-598 |
| Cow position: | chr15:44282208-44281981 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 366-525 |
| Cow position: | chr15:6084858-6085019 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 366-560 |
| Cow position: | chr15:43233085-43232893 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 367-592 |
| Cow position: | chr15:51047189-51046967 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 369-597 |
| Cow position: | chr15:23753536-23753761 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 375-560 |
| Cow position: | chr15:22431339-22431161 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 126, 34 |
| Conread position: | 375-590 |
| Cow position: | chr15:15285619-15285401 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 376-587 |
| Cow position: | chr15:29931134-29930935 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 128, 18 |
| Conread position: | 377-598 |
| Cow position: | chr15:42847683-42847471 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 212, 82 |
| Conread position: | 379-525 |
| Cow position: | chr15:41008409-41008560 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 379-595 |
| Cow position: | chr15:26405135-26405346 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 122, 79 |
| Conread position: | 383-600 |
| Cow position: | chr15:24510656-24510448 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 68, 111 |
| Conread position: | 388-511 |
| Cow position: | chr15:23053337-23053216 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 45 |
| Conread position: | 388-596 |
| Cow position: | chr15:41068964-41069165 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 391-593 |
| Cow position: | chr15:16455904-16455707 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 111, 21 |
| Conread position: | 399-540 |
| Cow position: | chr15:8442200-8442055 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 400-599 |
| Cow position: | chr15:48426996-48427201 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 149 |
| Conread position: | 413-587 |
| Cow position: | chr15:11675648-11675820 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 117 |
| Conread position: | 416-599 |
| Cow position: | chr15:22241283-22241112 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 418-591 |
| Cow position: | chr15:48841438-48841268 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 423-586 |
| Cow position: | chr15:7316513-7316671 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 449-596 |
| Cow position: | chr15:29815525-29815664 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 463-587 |
| Cow position: | chr15:22713824-22713954 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 463-596 |
| Cow position: | chr15:7478031-7477893 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 463-596 |
| Cow position: | chr15:23265535-23265671 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 463-596 |
| Cow position: | chr15:52204752-52204888 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 463-600 |
| Cow position: | chr15:11997487-11997626 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 464-596 |
| Cow position: | chr15:40270028-40269893 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 469-581 |
| Cow position: | chr15:23277506-23277392 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 471-589 |
| Cow position: | chr15:14974424-14974304 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.