Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 351-595 |
| Cow position: | chr16:28767510-28767751 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 105 |
| Conread position: | 353-596 |
| Cow position: | chr16:9987950-9987706 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 209 |
| Conread position: | 353-596 |
| Cow position: | chr16:44599181-44599414 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 354-507 |
| Cow position: | chr16:21028685-21028527 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 354-592 |
| Cow position: | chr16:32585864-32585634 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 355-510 |
| Cow position: | chr16:18692913-18692756 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 139, 104 |
| Conread position: | 355-515 |
| Cow position: | chr16:17432722-17432562 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 355-528 |
| Cow position: | chr16:33043534-33043354 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 91 |
| Conread position: | 355-536 |
| Cow position: | chr16:40272074-40272252 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 355-560 |
| Cow position: | chr16:42732871-42732665 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 355-563 |
| Cow position: | chr16:15093234-15093025 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 355-565 |
| Cow position: | chr16:47559093-47559299 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 355-568 |
| Cow position: | chr16:1084413-1084207 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 355-568 |
| Cow position: | chr16:45087655-45087870 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 195 |
| Conread position: | 355-578 |
| Cow position: | chr16:11752000-11752232 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 355-579 |
| Cow position: | chr16:15443672-15443890 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 355-580 |
| Cow position: | chr16:48283359-48283582 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 355-587 |
| Cow position: | chr16:25937869-25938102 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 355-591 |
| Cow position: | chr16:38178767-38179010 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 355-592 |
| Cow position: | chr16:14325330-14325576 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-598 |
| Cow position: | chr16:16163377-16163140 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 355-598 |
| Cow position: | chr16:29829199-29828956 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 355-598 |
| Cow position: | chr16:47341466-47341225 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 150, 20 |
| Conread position: | 355-599 |
| Cow position: | chr16:21168225-21168459 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 355-600 |
| Cow position: | chr16:11295482-11295729 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 356-509 |
| Cow position: | chr16:52177279-52177431 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 356-587 |
| Cow position: | chr16:14364869-14364641 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 356-587 |
| Cow position: | chr16:24875071-24874848 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 357-560 |
| Cow position: | chr16:13553246-13553041 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 171 |
| Conread position: | 357-591 |
| Cow position: | chr16:5911284-5911522 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 357-592 |
| Cow position: | chr16:17003773-17004006 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 357-592 |
| Cow position: | chr16:20406055-20405817 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 358-590 |
| Cow position: | chr16:10776082-10775850 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 358-590 |
| Cow position: | chr16:19342962-19342728 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 358-598 |
| Cow position: | chr16:28850284-28850053 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 359-596 |
| Cow position: | chr16:46029939-46030176 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 359-598 |
| Cow position: | chr16:7553529-7553765 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 361-581 |
| Cow position: | chr16:6204987-6204765 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 361-596 |
| Cow position: | chr16:45698574-45698344 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 143, 22 |
| Conread position: | 364-599 |
| Cow position: | chr16:12450907-12450676 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 12, 17 |
| Conread position: | 375-600 |
| Cow position: | chr16:13831567-13831338 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 128, 78 |
| Conread position: | 378-591 |
| Cow position: | chr16:27075532-27075745 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 126, 80 |
| Conread position: | 379-576 |
| Cow position: | chr16:37158831-37159025 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 130, 72 |
| Conread position: | 382-592 |
| Cow position: | chr16:42708373-42708156 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 383-570 |
| Cow position: | chr16:53547014-53546824 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 383-580 |
| Cow position: | chr16:46524143-46523945 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 384-587 |
| Cow position: | chr16:5594264-5594471 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 387-494 |
| Cow position: | chr16:10686661-10686555 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 388-564 |
| Cow position: | chr16:16713694-16713854 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 388-595 |
| Cow position: | chr16:27339723-27339931 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 49, 67 |
| Conread position: | 389-600 |
| Cow position: | chr16:27579459-27579255 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 193, 60 |
| Conread position: | 389-600 |
| Cow position: | chr16:28466888-28466677 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 173, 72 |
| Conread position: | 399-596 |
| Cow position: | chr16:19665603-19665420 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 401-559 |
| Cow position: | chr16:45684698-45684859 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 401-591 |
| Cow position: | chr16:38883553-38883741 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 401-596 |
| Cow position: | chr16:13360521-13360718 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 402-598 |
| Cow position: | chr16:52731518-52731708 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 409-598 |
| Cow position: | chr16:46450796-46450983 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 417-590 |
| Cow position: | chr16:11438723-11438898 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 82, 63 |
| Conread position: | 417-596 |
| Cow position: | chr16:49544419-49544240 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 417-598 |
| Cow position: | chr16:12217332-12217507 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 36 |
| Conread position: | 422-587 |
| Cow position: | chr16:54295080-54295252 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 459-597 |
| Cow position: | chr16:18389163-18389304 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 461-597 |
| Cow position: | chr16:9948909-9949043 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 463-592 |
| Cow position: | chr16:17867397-17867269 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 463-593 |
| Cow position: | chr16:52487966-52488100 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 463-594 |
| Cow position: | chr16:42473404-42473535 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 463-596 |
| Cow position: | chr16:13043906-13044043 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 463-600 |
| Cow position: | chr16:2312577-2312440 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 464-588 |
| Cow position: | chr16:43742879-43742755 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 466-596 |
| Cow position: | chr16:36910956-36910822 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 469-590 |
| Cow position: | chr16:45157389-45157268 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 470-591 |
| Cow position: | chr16:28843422-28843544 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 473-592 |
| Cow position: | chr16:7085299-7085417 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.