Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 320-598 |
| Cow position: | chr18:38671887-38672164 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 339-596 |
| Cow position: | chr18:23656377-23656118 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 351-553 |
| Cow position: | chr18:24503163-24503363 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 353-563 |
| Cow position: | chr18:17108733-17108947 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 353-592 |
| Cow position: | chr18:52591898-52592134 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 353-594 |
| Cow position: | chr18:52674366-52674135 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 354-591 |
| Cow position: | chr18:21013198-21012963 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 355-526 |
| Cow position: | chr18:17342273-17342441 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 355-550 |
| Cow position: | chr18:17009390-17009586 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 355-577 |
| Cow position: | chr18:23826953-23826732 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 355-587 |
| Cow position: | chr18:8090104-8090333 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 355-587 |
| Cow position: | chr18:21106187-21105946 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 355-588 |
| Cow position: | chr18:21714845-21715081 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 355-592 |
| Cow position: | chr18:35098438-35098210 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 355-595 |
| Cow position: | chr18:36345943-36345718 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-596 |
| Cow position: | chr18:17028223-17028455 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 355-596 |
| Cow position: | chr18:17227958-17227709 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 355-596 |
| Cow position: | chr18:56010237-56010473 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 355-597 |
| Cow position: | chr18:44048854-44049086 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 355-597 |
| Cow position: | chr18:54166102-54165866 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-598 |
| Cow position: | chr18:32228620-32228383 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 355-598 |
| Cow position: | chr18:43130393-43130645 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 355-598 |
| Cow position: | chr18:54084419-54084176 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 355-600 |
| Cow position: | chr18:39740266-39740516 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 356-598 |
| Cow position: | chr18:1069828-1069584 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 356-598 |
| Cow position: | chr18:16147855-16147615 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 357-589 |
| Cow position: | chr18:29043143-29042910 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 358-490 |
| Cow position: | chr18:21767010-21766872 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 358-594 |
| Cow position: | chr18:52570964-52571209 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 358-598 |
| Cow position: | chr18:290370-290127 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 358-598 |
| Cow position: | chr18:26448237-26448473 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 361-582 |
| Cow position: | chr18:13665451-13665228 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 363-592 |
| Cow position: | chr18:28665924-28666155 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 367-550 |
| Cow position: | chr18:18557256-18557064 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 375-590 |
| Cow position: | chr18:42248527-42248312 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 126 |
| Conread position: | 375-592 |
| Cow position: | chr18:55059331-55059532 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 379-591 |
| Cow position: | chr18:18975818-18976022 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 382-599 |
| Cow position: | chr18:45576606-45576382 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 76, 190 |
| Conread position: | 384-575 |
| Cow position: | chr18:21388199-21388385 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 386-591 |
| Cow position: | chr18:8626363-8626158 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 106, 75 |
| Conread position: | 395-590 |
| Cow position: | chr18:43537731-43537928 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 66 |
| Conread position: | 397-585 |
| Cow position: | chr18:20223010-20222818 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 405-558 |
| Cow position: | chr18:35464585-35464740 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 417-598 |
| Cow position: | chr18:30519011-30519196 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 128, 36 |
| Conread position: | 420-580 |
| Cow position: | chr18:4779068-4779228 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 421-600 |
| Cow position: | chr18:6056037-6055854 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 139 |
| Conread position: | 463-598 |
| Cow position: | chr18:36334488-36334351 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 111 |
| Conread position: | 465-597 |
| Cow position: | chr18:23669213-23669073 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 468-596 |
| Cow position: | chr18:35471745-35471615 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 470-596 |
| Cow position: | chr18:4784250-4784120 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 472-600 |
| Cow position: | chr18:2024827-2024696 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.