Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 339-524 |
| Cow position: | chr20:8460783-8460972 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 348-595 |
| Cow position: | chr20:6869739-6869983 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 6 |
| Conread position: | 351-590 |
| Cow position: | chr20:11749977-11749745 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 351-591 |
| Cow position: | chr20:26724976-26724738 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 352-503 |
| Cow position: | chr20:20362354-20362202 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 354-598 |
| Cow position: | chr20:22694951-22694711 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 355-507 |
| Cow position: | chr20:7949704-7949860 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 355-554 |
| Cow position: | chr20:26745501-26745280 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-560 |
| Cow position: | chr20:25352143-25351924 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 141 |
| Conread position: | 355-590 |
| Cow position: | chr20:1374624-1374386 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 355-596 |
| Cow position: | chr20:4874806-4874550 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 22, 233 |
| Conread position: | 355-596 |
| Cow position: | chr20:10061702-10061459 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-596 |
| Cow position: | chr20:12684193-12683969 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 56 |
| Conread position: | 355-596 |
| Cow position: | chr20:16788494-16788741 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 355-597 |
| Cow position: | chr20:7213145-7212901 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 355-598 |
| Cow position: | chr20:7934022-7934264 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 355-598 |
| Cow position: | chr20:10575734-10575496 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 355-598 |
| Cow position: | chr20:13023144-13022900 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 355-598 |
| Cow position: | chr20:13252989-13252748 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 355-600 |
| Cow position: | chr20:32347938-32348176 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 147, 37 |
| Conread position: | 356-545 |
| Cow position: | chr20:31488544-31488355 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 356-588 |
| Cow position: | chr20:3157842-3158081 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 356-590 |
| Cow position: | chr20:6446945-6446704 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 20, 110 |
| Conread position: | 356-590 |
| Cow position: | chr20:28021171-28021409 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 356-591 |
| Cow position: | chr20:21415285-21415036 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 357-547 |
| Cow position: | chr20:14990454-14990262 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 357-597 |
| Cow position: | chr20:13817911-13818160 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 358-590 |
| Cow position: | chr20:26687817-26688046 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 363-596 |
| Cow position: | chr20:30703627-30703859 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 376-595 |
| Cow position: | chr20:24979369-24979152 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 39, 180 |
| Conread position: | 384-593 |
| Cow position: | chr20:2858753-2858970 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 171 |
| Conread position: | 389-588 |
| Cow position: | chr20:8038724-8038526 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 391-527 |
| Cow position: | chr20:14704079-14703940 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 60 |
| Conread position: | 391-590 |
| Cow position: | chr20:9036170-9035967 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 394-580 |
| Cow position: | chr20:39199968-39199779 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 59 |
| Conread position: | 398-598 |
| Cow position: | chr20:14403782-14403982 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 102, 165 |
| Conread position: | 401-598 |
| Cow position: | chr20:20372485-20372291 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 404-598 |
| Cow position: | chr20:4969669-4969484 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 411-594 |
| Cow position: | chr20:19865177-19864993 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 11 |
| Conread position: | 413-592 |
| Cow position: | chr20:17786130-17785939 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 422-596 |
| Cow position: | chr20:3501310-3501141 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 424-594 |
| Cow position: | chr20:8099534-8099705 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 80, 39 |
| Conread position: | 432-593 |
| Cow position: | chr20:26473977-26474143 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 438-598 |
| Cow position: | chr20:868078-867916 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 439-598 |
| Cow position: | chr20:5795658-5795818 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 442-591 |
| Cow position: | chr20:9079205-9079054 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 453-592 |
| Cow position: | chr20:27407635-27407496 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 453-600 |
| Cow position: | chr20:15147870-15147720 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 463-587 |
| Cow position: | chr20:22716561-22716436 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 463-597 |
| Cow position: | chr20:4359555-4359416 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 463-598 |
| Cow position: | chr20:25126370-25126235 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-600 |
| Cow position: | chr20:20557509-20557367 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 468-593 |
| Cow position: | chr20:19406236-19406362 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 472-592 |
| Cow position: | chr20:4658859-4658977 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.