Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 338-592 |
| Cow position: | chr21:3649111-3648866 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 351-522 |
| Cow position: | chr21:12560346-12560173 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 9, 110 |
| Conread position: | 353-487 |
| Cow position: | chr21:14168040-14168175 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 354-491 |
| Cow position: | chr21:46327555-46327696 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 354-590 |
| Cow position: | chr21:26057996-26057755 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 354-592 |
| Cow position: | chr21:10110228-10110467 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 354-593 |
| Cow position: | chr21:40526704-40526459 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 354-596 |
| Cow position: | chr21:33308819-33309051 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 355-508 |
| Cow position: | chr21:32928479-32928330 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 355-546 |
| Cow position: | chr21:4011974-4012171 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 355-587 |
| Cow position: | chr21:3808419-3808655 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 355-592 |
| Cow position: | chr21:48616357-48616596 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 355-595 |
| Cow position: | chr21:665032-664804 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 355-595 |
| Cow position: | chr21:13160159-13160399 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 355-595 |
| Cow position: | chr21:22944836-22945075 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 355-599 |
| Cow position: | chr21:41728786-41728528 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-600 |
| Cow position: | chr21:6400359-6400107 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 22, 5 |
| Conread position: | 355-600 |
| Cow position: | chr21:28624817-28625057 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 356-568 |
| Cow position: | chr21:37341759-37341547 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 144 |
| Conread position: | 356-600 |
| Cow position: | chr21:31479199-31479440 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 152 |
| Conread position: | 357-587 |
| Cow position: | chr21:4775261-4775484 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 147, 18 |
| Conread position: | 357-591 |
| Cow position: | chr21:41458356-41458116 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 357-596 |
| Cow position: | chr21:38678159-38678393 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 358-560 |
| Cow position: | chr21:41430128-41430335 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 358-592 |
| Cow position: | chr21:7646521-7646286 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 358-593 |
| Cow position: | chr21:20575368-20575138 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 360-527 |
| Cow position: | chr21:2014170-2014335 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 362-595 |
| Cow position: | chr21:41100-41329 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 363-587 |
| Cow position: | chr21:9202892-9203117 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 366-528 |
| Cow position: | chr21:20999913-20999755 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 381-574 |
| Cow position: | chr21:19435807-19435621 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 382-590 |
| Cow position: | chr21:8719208-8719000 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 105, 76 |
| Conread position: | 382-592 |
| Cow position: | chr21:21180521-21180724 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 179, 55 |
| Conread position: | 384-597 |
| Cow position: | chr21:18512315-18512531 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 79 |
| Conread position: | 389-597 |
| Cow position: | chr21:30644839-30644635 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 397-560 |
| Cow position: | chr21:31919728-31919888 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 397-570 |
| Cow position: | chr21:32828279-32828110 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 397-589 |
| Cow position: | chr21:5974991-5975182 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 184, 167 |
| Conread position: | 398-596 |
| Cow position: | chr21:13277602-13277795 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 103, 55 |
| Conread position: | 401-589 |
| Cow position: | chr21:47868531-47868717 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 103, 36 |
| Conread position: | 413-591 |
| Cow position: | chr21:6711833-6711652 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 177 |
| Conread position: | 417-592 |
| Cow position: | chr21:33215734-33215909 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 41 |
| Conread position: | 430-597 |
| Cow position: | chr21:17520352-17520188 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 10 |
| Conread position: | 432-600 |
| Cow position: | chr21:9965100-9964933 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 463-592 |
| Cow position: | chr21:23399103-23399232 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 463-595 |
| Cow position: | chr21:9041015-9041150 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 463-596 |
| Cow position: | chr21:33292864-33293001 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 466-597 |
| Cow position: | chr21:24944743-24944608 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 473-598 |
| Cow position: | chr21:30897569-30897697 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 475-598 |
| Cow position: | chr21:2874539-2874418 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.