Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 347-590 |
| Cow position: | chr23:27542408-27542654 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 352-581 |
| Cow position: | chr23:35270556-35270784 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 11, 109 |
| Conread position: | 353-591 |
| Cow position: | chr23:7289183-7288950 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 354-471 |
| Cow position: | chr23:8101543-8101661 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 354-587 |
| Cow position: | chr23:777927-777692 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 354-591 |
| Cow position: | chr23:36217455-36217214 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 190 |
| Conread position: | 354-598 |
| Cow position: | chr23:37138487-37138724 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 355-474 |
| Cow position: | chr23:11055099-11055215 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 355-505 |
| Cow position: | chr23:18346466-18346619 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-515 |
| Cow position: | chr23:34042656-34042497 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 355-527 |
| Cow position: | chr23:38107323-38107498 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-554 |
| Cow position: | chr23:39899428-39899629 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-574 |
| Cow position: | chr23:28200060-28200292 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 355-578 |
| Cow position: | chr23:27991222-27991458 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 355-587 |
| Cow position: | chr23:25566220-25566443 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 355-592 |
| Cow position: | chr23:40498841-40499081 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 355-592 |
| Cow position: | chr23:40539051-40538822 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 355-594 |
| Cow position: | chr23:27351083-27350852 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 355-595 |
| Cow position: | chr23:9392632-9392395 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 355-596 |
| Cow position: | chr23:31026241-31025998 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 146, 21 |
| Conread position: | 355-598 |
| Cow position: | chr23:19913750-19913507 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 356-590 |
| Cow position: | chr23:4656382-4656617 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 111 |
| Conread position: | 356-592 |
| Cow position: | chr23:18875541-18875765 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 86 |
| Conread position: | 357-559 |
| Cow position: | chr23:5418685-5418890 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 357-574 |
| Cow position: | chr23:7287386-7287165 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 357-589 |
| Cow position: | chr23:13637887-13637652 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 357-597 |
| Cow position: | chr23:1161025-1160772 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 358-548 |
| Cow position: | chr23:7709169-7709366 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 358-560 |
| Cow position: | chr23:14276875-14276675 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 359-557 |
| Cow position: | chr23:15289821-15290016 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 361-586 |
| Cow position: | chr23:25360183-25360417 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 361-598 |
| Cow position: | chr23:9420919-9420682 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 362-590 |
| Cow position: | chr23:36347919-36348155 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 173 |
| Conread position: | 363-592 |
| Cow position: | chr23:40920618-40920848 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 375-587 |
| Cow position: | chr23:35383963-35383739 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 375-592 |
| Cow position: | chr23:28831632-28831849 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 75, 194 |
| Conread position: | 375-596 |
| Cow position: | chr23:26184309-26184093 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 376-591 |
| Cow position: | chr23:27900438-27900652 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 383-592 |
| Cow position: | chr23:4602236-4602026 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 78 |
| Conread position: | 384-557 |
| Cow position: | chr23:34773723-34773560 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 388-527 |
| Cow position: | chr23:26982322-26982461 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 397-570 |
| Cow position: | chr23:28384315-28384481 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 397-576 |
| Cow position: | chr23:28010656-28010488 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 397-576 |
| Cow position: | chr23:28067489-28067322 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 401-597 |
| Cow position: | chr23:37036471-37036271 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 125 |
| Conread position: | 402-600 |
| Cow position: | chr23:19643172-19643372 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 404-599 |
| Cow position: | chr23:18154616-18154811 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 100, 54 |
| Conread position: | 407-545 |
| Cow position: | chr23:1529900-1529760 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 409-594 |
| Cow position: | chr23:40122760-40122953 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 410-586 |
| Cow position: | chr23:15058746-15058573 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 413-587 |
| Cow position: | chr23:12004350-12004519 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 10 |
| Conread position: | 417-592 |
| Cow position: | chr23:19954219-19954042 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 417-594 |
| Cow position: | chr23:22153604-22153425 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 428-592 |
| Cow position: | chr23:11093287-11093454 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 431-579 |
| Cow position: | chr23:7064803-7064663 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 462-591 |
| Cow position: | chr23:29104189-29104056 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 463-590 |
| Cow position: | chr23:5904257-5904129 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 463-598 |
| Cow position: | chr23:1663805-1663940 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 463-598 |
| Cow position: | chr23:40465277-40465144 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 464-600 |
| Cow position: | chr23:20173271-20173410 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 469-592 |
| Cow position: | chr23:38248962-38249088 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 474-598 |
| Cow position: | chr23:25000437-25000310 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 483-587 |
| Cow position: | chr23:35487253-35487357 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.