Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 268-598 |
| Cow position: | chr28:18078067-18077729 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 339-589 |
| Cow position: | chr28:12226221-12225967 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 351-504 |
| Cow position: | chr28:14555539-14555698 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 351-589 |
| Cow position: | chr28:978526-978282 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 353-590 |
| Cow position: | chr28:21118340-21118108 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 353-592 |
| Cow position: | chr28:10574257-10574027 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-536 |
| Cow position: | chr28:10163226-10163409 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 149, 36 |
| Conread position: | 355-552 |
| Cow position: | chr28:24330433-24330236 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 21, 115 |
| Conread position: | 355-580 |
| Cow position: | chr28:25307001-25307223 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 355-589 |
| Cow position: | chr28:21941743-21941505 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 206 |
| Conread position: | 355-590 |
| Cow position: | chr28:13179513-13179754 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 355-591 |
| Cow position: | chr28:757250-757022 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 355-591 |
| Cow position: | chr28:32163465-32163224 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 355-593 |
| Cow position: | chr28:31415118-31414874 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 355-596 |
| Cow position: | chr28:20252280-20252520 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 355-596 |
| Cow position: | chr28:22202166-22202409 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 355-598 |
| Cow position: | chr28:7595345-7595102 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 355-600 |
| Cow position: | chr28:3140059-3140306 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 85 |
| Conread position: | 356-475 |
| Cow position: | chr28:11783688-11783565 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 356-569 |
| Cow position: | chr28:6871293-6871503 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 356-597 |
| Cow position: | chr28:22478862-22479087 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 357-575 |
| Cow position: | chr28:28780070-28780279 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 20, 110 |
| Conread position: | 357-598 |
| Cow position: | chr28:3803201-3803438 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 358-578 |
| Cow position: | chr28:2577324-2577544 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 358-598 |
| Cow position: | chr28:11690182-11689947 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 363-591 |
| Cow position: | chr28:16613537-16613765 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 131 |
| Conread position: | 363-600 |
| Cow position: | chr28:7020382-7020150 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 364-590 |
| Cow position: | chr28:25945663-25945441 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 366-600 |
| Cow position: | chr28:4375137-4374911 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 373-599 |
| Cow position: | chr28:4404035-4404262 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 131, 10 |
| Conread position: | 374-592 |
| Cow position: | chr28:27111245-27111466 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 375-560 |
| Cow position: | chr28:5158389-5158577 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 375-581 |
| Cow position: | chr28:28438618-28438826 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 126, 86 |
| Conread position: | 375-598 |
| Cow position: | chr28:10971447-10971676 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 375-599 |
| Cow position: | chr28:25498489-25498278 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 378-576 |
| Cow position: | chr28:6508262-6508464 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 383-532 |
| Cow position: | chr28:28042221-28042078 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 383-590 |
| Cow position: | chr28:15993616-15993820 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 384-591 |
| Cow position: | chr28:2642001-2642209 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 117, 69 |
| Conread position: | 385-581 |
| Cow position: | chr28:1885344-1885539 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 388-590 |
| Cow position: | chr28:30967767-30967959 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 116, 37 |
| Conread position: | 394-580 |
| Cow position: | chr28:4110916-4111098 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 413-597 |
| Cow position: | chr28:3818266-3818077 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 416-567 |
| Cow position: | chr28:26534522-26534672 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 417-596 |
| Cow position: | chr28:1779736-1779915 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 419-600 |
| Cow position: | chr28:16419744-16419916 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 424-554 |
| Cow position: | chr28:4047621-4047752 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 35 |
| Conread position: | 463-597 |
| Cow position: | chr28:20265491-20265628 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 464-593 |
| Cow position: | chr28:7376753-7376884 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 464-599 |
| Cow position: | chr28:3069013-3069154 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 5 |
| Conread position: | 469-596 |
| Cow position: | chr28:6277454-6277326 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 74 |
Show alignments to all cow chromosomes.