Cow genome map

Conread name: Ss1.1-Pig1-37B21.5

Conread position: 316-577
Cow position: chr5:18674569-18674832 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 18, 143

Conread position: 340-596
Cow position: chr5:66434623-66434890 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 8, 133

Conread position: 350-577
Cow position: chr5:51360987-51361220 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 351-560
Cow position: chr5:35580355-35580570 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 7, 212

Conread position: 351-580
Cow position: chr5:16211411-16211170 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 351-592
Cow position: chr5:44660133-44659898 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 8, 143

Conread position: 351-598
Cow position: chr5:9675538-9675281 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 7, 0

Conread position: 351-598
Cow position: chr5:41652140-41651890 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 7, 115

Conread position: 353-596
Cow position: chr5:38970744-38970985 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 24, 72

Conread position: 354-547
Cow position: chr5:21517090-21516899 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 23, 52

Conread position: 354-560
Cow position: chr5:33283401-33283193 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 23, 101

Conread position: 354-590
Cow position: chr5:10095761-10095512 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 23, 0

Conread position: 354-595
Cow position: chr5:27901953-27902187 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 31, 42

Conread position: 354-596
Cow position: chr5:52816485-52816240 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 6

Conread position: 354-597
Cow position: chr5:11955446-11955205 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 107

Conread position: 354-599
Cow position: chr5:66352791-66353018 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 23, 49

Conread position: 355-456
Cow position: chr5:15596212-15596109 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 355-533
Cow position: chr5:65096606-65096785 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 21, 71

Conread position: 355-565
Cow position: chr5:35172876-35172676 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 47

Conread position: 355-565
Cow position: chr5:42045251-42045461 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 28, 87

Conread position: 355-585
Cow position: chr5:14136517-14136283 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 218

Conread position: 355-587
Cow position: chr5:18582861-18583086 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 22, 98

Conread position: 355-590
Cow position: chr5:37668908-37669146 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 129, 103

Conread position: 355-591
Cow position: chr5:50227488-50227726 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 22, 35

Conread position: 355-592
Cow position: chr5:55985463-55985224 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 116

Conread position: 355-592
Cow position: chr5:56097063-56096823 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 41

Conread position: 355-592
Cow position: chr5:66170459-66170228 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 175, 21

Conread position: 355-595
Cow position: chr5:7659590-7659353 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 106

Conread position: 355-595
Cow position: chr5:8232449-8232207 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 86

Conread position: 355-595
Cow position: chr5:18883031-18882801 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 22, 37

Conread position: 355-596
Cow position: chr5:30336024-30335783 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 22, 56

Conread position: 355-596
Cow position: chr5:70768607-70768850 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 98, 21

Conread position: 355-597
Cow position: chr5:53914810-53914589 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 22, 65

Conread position: 355-598
Cow position: chr5:4989642-4989887 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 100

Conread position: 355-598
Cow position: chr5:44491665-44491915 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 101

Conread position: 355-598
Cow position: chr5:57733635-57733867 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 8, 134

Conread position: 355-600
Cow position: chr5:50770295-50770049 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 5, 99

Conread position: 355-600
Cow position: chr5:70609049-70609292 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 191
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 22, 65

Conread position: 356-508
Cow position: chr5:31784957-31785108 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 125
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 27, 0

Conread position: 356-580
Cow position: chr5:32336007-32335778 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 69

Conread position: 356-582
Cow position: chr5:6567947-6568173 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 100

Conread position: 356-588
Cow position: chr5:55195482-55195709 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 67

Conread position: 357-565
Cow position: chr5:31722704-31722492 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 20, 163

Conread position: 357-591
Cow position: chr5:31436988-31436756 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 105

Conread position: 357-591
Cow position: chr5:40888776-40888542 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 68

Conread position: 357-598
Cow position: chr5:40633581-40633811 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 39

Conread position: 357-600
Cow position: chr5:35990401-35990158 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 20, 33

Conread position: 358-566
Cow position: chr5:63818084-63817874 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 95

Conread position: 358-590
Cow position: chr5:13940993-13940757 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 211

Conread position: 358-599
Cow position: chr5:65053704-65053938 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 19, 92

Conread position: 359-598
Cow position: chr5:33471190-33470958 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 18, 28

Conread position: 359-599
Cow position: chr5:51761132-51760896 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 18, 68

Conread position: 361-557
Cow position: chr5:17829549-17829348 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 17, 5

Conread position: 361-590
Cow position: chr5:7218143-7218368 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 102

Conread position: 361-595
Cow position: chr5:57291064-57290830 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 16, 99

Conread position: 364-538
Cow position: chr5:23414196-23414025 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 96

Conread position: 364-598
Cow position: chr5:34471003-34470770 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 47

Conread position: 370-575
Cow position: chr5:49635218-49635008 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 13, 85

Conread position: 375-577
Cow position: chr5:7780474-7780670 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 161
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 27, 0

Conread position: 375-598
Cow position: chr5:18040841-18041059 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 75, 159

Conread position: 378-591
Cow position: chr5:51071394-51071597 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 125, 16

Conread position: 382-592
Cow position: chr5:9712717-9712506 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 50, 159

Conread position: 383-594
Cow position: chr5:14215871-14215660 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 118, 69

Conread position: 385-598
Cow position: chr5:29337108-29336890 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 146
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 388-576
Cow position: chr5:57783868-57784060 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 113, 0

Conread position: 388-595
Cow position: chr5:57147697-57147911 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 389-503
Cow position: chr5:59622909-59622794 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 397-599
Cow position: chr5:42787006-42786806 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 104, 124

Conread position: 398-593
Cow position: chr5:11975023-11974827 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 103, 55

Conread position: 398-598
Cow position: chr5:4329348-4329548 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 161
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 100, 20

Conread position: 401-591
Cow position: chr5:32139836-32139643 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 64, 48

Conread position: 405-600
Cow position: chr5:51994010-51994199 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 93, 0

Conread position: 407-590
Cow position: chr5:61876153-61875970 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 101, 51

Conread position: 408-594
Cow position: chr5:17507266-17507449 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 93, 39

Conread position: 412-597
Cow position: chr5:38866412-38866601 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 92, 49

Conread position: 413-596
Cow position: chr5:21937319-21937127 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 52, 23

Conread position: 416-590
Cow position: chr5:39327203-39327030 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 88, 43

Conread position: 418-591
Cow position: chr5:31641312-31641495 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 418-599
Cow position: chr5:1751156-1751334 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 84, 41

Conread position: 418-600
Cow position: chr5:15806737-15806916 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 86, 21

Conread position: 424-590
Cow position: chr5:62574171-62574337 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 25

Conread position: 431-586
Cow position: chr5:26509908-26509753 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 22

Conread position: 432-578
Cow position: chr5:41144845-41144992 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 72, 26

Conread position: 444-587
Cow position: chr5:21324711-21324856 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 18

Conread position: 447-595
Cow position: chr5:3825148-3825295 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 84

Conread position: 462-600
Cow position: chr5:14832505-14832365 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 126, 0

Conread position: 463-584
Cow position: chr5:364482-364359 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 463-587
Cow position: chr5:27175973-27176100 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 463-592
Cow position: chr5:54557641-54557773 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 108

Conread position: 463-598
Cow position: chr5:57127551-57127689 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 463-598
Cow position: chr5:63160159-63160297 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 463-599
Cow position: chr5:23753111-23752969 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.