Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 339-592 |
| Cow position: | chr8:6585963-6586216 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 347-598 |
| Cow position: | chr8:58642695-58642435 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 350-591 |
| Cow position: | chr8:36608715-36608471 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 351-552 |
| Cow position: | chr8:48084735-48084937 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 104 |
| Conread position: | 351-553 |
| Cow position: | chr8:19498121-19497906 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 137 |
| Conread position: | 351-590 |
| Cow position: | chr8:19362688-19362928 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 114 |
| Conread position: | 353-519 |
| Cow position: | chr8:31954660-31954827 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 110 |
| Conread position: | 353-594 |
| Cow position: | chr8:21585905-21586143 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 353-597 |
| Cow position: | chr8:14617558-14617299 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 353-600 |
| Cow position: | chr8:36107345-36107595 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 354-520 |
| Cow position: | chr8:19128182-19128022 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 354-585 |
| Cow position: | chr8:39097778-39097547 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 355-529 |
| Cow position: | chr8:60055442-60055266 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 355-554 |
| Cow position: | chr8:46451723-46451531 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 355-560 |
| Cow position: | chr8:46714344-46714142 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 100 |
| Conread position: | 355-566 |
| Cow position: | chr8:41146879-41147091 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 113 |
| Conread position: | 355-585 |
| Cow position: | chr8:8278157-8277931 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 355-587 |
| Cow position: | chr8:43399048-43398817 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-590 |
| Cow position: | chr8:26928902-26928664 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-591 |
| Cow position: | chr8:26158468-26158702 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 355-591 |
| Cow position: | chr8:37381478-37381717 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 355-591 |
| Cow position: | chr8:41411571-41411796 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 355-592 |
| Cow position: | chr8:53942637-53942386 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-593 |
| Cow position: | chr8:59472838-59472602 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 355-595 |
| Cow position: | chr8:21945767-21946009 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 100 |
| Conread position: | 355-596 |
| Cow position: | chr8:11058198-11058431 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 355-596 |
| Cow position: | chr8:23849872-23850111 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 355-598 |
| Cow position: | chr8:5503691-5503931 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 355-598 |
| Cow position: | chr8:18984553-18984315 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 355-598 |
| Cow position: | chr8:51443222-51442982 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 355-598 |
| Cow position: | chr8:51919875-51919634 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 355-600 |
| Cow position: | chr8:16648361-16648119 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 355-600 |
| Cow position: | chr8:58424884-58425117 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 356-562 |
| Cow position: | chr8:25676771-25676562 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 356-563 |
| Cow position: | chr8:5185866-5186071 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 356-590 |
| Cow position: | chr8:16497341-16497111 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 356-591 |
| Cow position: | chr8:31288920-31288687 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 356-598 |
| Cow position: | chr8:59727926-59728169 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 356-600 |
| Cow position: | chr8:16060105-16059865 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 148, 65 |
| Conread position: | 357-527 |
| Cow position: | chr8:26867657-26867828 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 20, 129 |
| Conread position: | 357-536 |
| Cow position: | chr8:1386317-1386496 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 357-581 |
| Cow position: | chr8:11378237-11378449 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 357-585 |
| Cow position: | chr8:17128836-17128612 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 358-554 |
| Cow position: | chr8:22227240-22227043 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 358-596 |
| Cow position: | chr8:31495157-31495396 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 358-598 |
| Cow position: | chr8:4999367-4999599 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 358-600 |
| Cow position: | chr8:25050068-25050312 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 359-515 |
| Cow position: | chr8:4347985-4347827 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 361-521 |
| Cow position: | chr8:12533181-12533027 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 361-600 |
| Cow position: | chr8:49392987-49392749 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 363-590 |
| Cow position: | chr8:43974676-43974453 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 14, 92 |
| Conread position: | 365-507 |
| Cow position: | chr8:21130194-21130338 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 97 |
| Conread position: | 375-575 |
| Cow position: | chr8:26397777-26397580 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 126, 65 |
| Conread position: | 375-586 |
| Cow position: | chr8:32513643-32513846 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 192, 16 |
| Conread position: | 376-600 |
| Cow position: | chr8:46279921-46280144 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 108, 82 |
| Conread position: | 383-587 |
| Cow position: | chr8:26195074-26194877 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 119, 57 |
| Conread position: | 383-595 |
| Cow position: | chr8:51588241-51588036 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 101, 70 |
| Conread position: | 385-590 |
| Cow position: | chr8:1506919-1506712 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 386-553 |
| Cow position: | chr8:45702099-45701932 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 150 |
| Conread position: | 390-577 |
| Cow position: | chr8:34396069-34396251 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 397-596 |
| Cow position: | chr8:53887053-53887251 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 398-590 |
| Cow position: | chr8:30473816-30473631 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 55 |
| Conread position: | 398-590 |
| Cow position: | chr8:61465681-61465865 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 108, 25 |
| Conread position: | 401-586 |
| Cow position: | chr8:24766761-24766578 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 105, 71 |
| Conread position: | 402-598 |
| Cow position: | chr8:58291317-58291115 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 42, 157 |
| Conread position: | 407-580 |
| Cow position: | chr8:20383886-20384060 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 413-585 |
| Cow position: | chr8:38234040-38233860 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 413-585 |
| Cow position: | chr8:61266476-61266648 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 96, 46 |
| Conread position: | 413-598 |
| Cow position: | chr8:44127865-44127675 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 414-593 |
| Cow position: | chr8:40697590-40697407 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 414-599 |
| Cow position: | chr8:24106390-24106573 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 166, 78 |
| Conread position: | 419-593 |
| Cow position: | chr8:29559637-29559814 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 420-563 |
| Cow position: | chr8:32828855-32829000 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 39 |
| Conread position: | 422-594 |
| Cow position: | chr8:28383050-28383214 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 428-592 |
| Cow position: | chr8:42399288-42399120 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 462-600 |
| Cow position: | chr8:44857559-44857701 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 463-595 |
| Cow position: | chr8:6409340-6409205 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 463-598 |
| Cow position: | chr8:27369181-27369318 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 463-598 |
| Cow position: | chr8:59137807-59137672 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 116 |
| Conread position: | 463-600 |
| Cow position: | chr8:19876717-19876588 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 477-598 |
| Cow position: | chr8:24351565-24351439 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.