Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 314-598 |
| Cow position: | chr9:4677445-4677743 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 320-591 |
| Cow position: | chr9:24679364-24679644 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 339-587 |
| Cow position: | chr9:38773424-38773172 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 350-578 |
| Cow position: | chr9:16980895-16980678 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 351-563 |
| Cow position: | chr9:15962247-15962469 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 124 |
| Conread position: | 351-590 |
| Cow position: | chr9:25372743-25372499 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 353-585 |
| Cow position: | chr9:9784397-9784628 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 353-587 |
| Cow position: | chr9:16253017-16253243 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 354-565 |
| Cow position: | chr9:59588517-59588306 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 354-592 |
| Cow position: | chr9:3204156-3203913 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 354-594 |
| Cow position: | chr9:47447749-47447510 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 355-482 |
| Cow position: | chr9:55355735-55355602 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-509 |
| Cow position: | chr9:23740786-23740631 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 355-522 |
| Cow position: | chr9:32415225-32415393 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 355-527 |
| Cow position: | chr9:1930053-1929878 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 355-527 |
| Cow position: | chr9:7537859-7538021 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 355-560 |
| Cow position: | chr9:36089632-36089847 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 134 |
| Conread position: | 355-579 |
| Cow position: | chr9:10355546-10355773 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 355-586 |
| Cow position: | chr9:34674740-34674519 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 355-590 |
| Cow position: | chr9:5607682-5607456 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 355-591 |
| Cow position: | chr9:35224644-35224404 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 355-592 |
| Cow position: | chr9:10310963-10311201 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 355-592 |
| Cow position: | chr9:55262555-55262794 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 183 |
| Conread position: | 355-598 |
| Cow position: | chr9:39236476-39236714 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 355-598 |
| Cow position: | chr9:41904128-41903894 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 233, 28 |
| Conread position: | 355-600 |
| Cow position: | chr9:26353212-26353466 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 356-554 |
| Cow position: | chr9:9548138-9548336 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 356-578 |
| Cow position: | chr9:12890193-12889970 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 356-586 |
| Cow position: | chr9:32688798-32689029 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 356-590 |
| Cow position: | chr9:56740494-56740719 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 357-586 |
| Cow position: | chr9:39647007-39646772 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 357-598 |
| Cow position: | chr9:15965193-15965444 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 358-598 |
| Cow position: | chr9:4721230-4721471 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 361-589 |
| Cow position: | chr9:6421301-6421069 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 361-600 |
| Cow position: | chr9:38350277-38350035 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 363-598 |
| Cow position: | chr9:53532101-53532340 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 363-600 |
| Cow position: | chr9:20700258-20700021 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 367-591 |
| Cow position: | chr9:54717289-54717512 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 375-541 |
| Cow position: | chr9:58655043-58654875 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 375-579 |
| Cow position: | chr9:40859750-40859543 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 129, 78 |
| Conread position: | 375-599 |
| Cow position: | chr9:62301923-62302146 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 376-596 |
| Cow position: | chr9:38069806-38070019 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 382-591 |
| Cow position: | chr9:47022478-47022688 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 118, 194 |
| Conread position: | 384-591 |
| Cow position: | chr9:31968919-31969127 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 77, 53 |
| Conread position: | 385-598 |
| Cow position: | chr9:32728577-32728789 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 119, 68 |
| Conread position: | 388-592 |
| Cow position: | chr9:18577258-18577053 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 113, 65 |
| Conread position: | 394-596 |
| Cow position: | chr9:37256187-37255977 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 394-598 |
| Cow position: | chr9:51159698-51159494 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 400-591 |
| Cow position: | chr9:47073708-47073896 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 59 |
| Conread position: | 405-573 |
| Cow position: | chr9:10150077-10150245 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 90, 48 |
| Conread position: | 410-595 |
| Cow position: | chr9:2710420-2710235 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 412-599 |
| Cow position: | chr9:56023419-56023603 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 47 |
| Conread position: | 413-598 |
| Cow position: | chr9:34937522-34937347 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 24 |
| Conread position: | 420-598 |
| Cow position: | chr9:15484012-15484191 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 424-599 |
| Cow position: | chr9:1976839-1977013 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 86, 45 |
| Conread position: | 432-595 |
| Cow position: | chr9:7755342-7755501 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 450-596 |
| Cow position: | chr9:62726057-62726206 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 460-595 |
| Cow position: | chr9:5485818-5485681 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 463-595 |
| Cow position: | chr9:30807522-30807656 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 463-598 |
| Cow position: | chr9:4025037-4024902 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-598 |
| Cow position: | chr9:25502587-25502721 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 101 |
| Conread position: | 466-595 |
| Cow position: | chr9:7530039-7530168 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 64 |
| Conread position: | 469-596 |
| Cow position: | chr9:51269807-51269676 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 474-595 |
| Cow position: | chr9:42739663-42739543 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 474-598 |
| Cow position: | chr9:55355322-55355195 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.