Cow genome map
| Conread name: | Ss1.1-Pig1-37B21.5 |
| Conread position: | 351-590 |
| Cow position: | chrX:8827489-8827248 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 7, 104 |
| Conread position: | 351-590 |
| Cow position: | chrX:20734521-20734763 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 7, 115 |
| Conread position: | 351-590 |
| Cow position: | chrX:33713531-33713285 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 353-581 |
| Cow position: | chrX:35695308-35695539 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 24, 216 |
| Conread position: | 353-590 |
| Cow position: | chrX:5648109-5647872 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 353-591 |
| Cow position: | chrX:25453539-25453784 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 353-593 |
| Cow position: | chrX:36044362-36044125 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 353-599 |
| Cow position: | chrX:263768-263519 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 353-600 |
| Cow position: | chrX:10462676-10462926 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 354-573 |
| Cow position: | chrX:17148010-17147790 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 354-585 |
| Cow position: | chrX:34865796-34865565 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 354-592 |
| Cow position: | chrX:4629633-4629392 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 354-592 |
| Cow position: | chrX:37139662-37139900 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 354-600 |
| Cow position: | chrX:4425020-4425269 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 355-559 |
| Cow position: | chrX:16933516-16933722 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 355-560 |
| Cow position: | chrX:46907021-46906822 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 355-575 |
| Cow position: | chrX:40142175-40141953 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 20, 106 |
| Conread position: | 355-576 |
| Cow position: | chrX:4794136-4793916 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 106 |
| Conread position: | 355-576 |
| Cow position: | chrX:21989874-21990086 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 34, 69 |
| Conread position: | 355-579 |
| Cow position: | chrX:27002748-27002977 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 355-585 |
| Cow position: | chrX:31386239-31386471 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 355-587 |
| Cow position: | chrX:37067383-37067641 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 355-591 |
| Cow position: | chrX:20128829-20128606 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-591 |
| Cow position: | chrX:20715873-20715636 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 355-593 |
| Cow position: | chrX:25848972-25849208 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 146, 65 |
| Conread position: | 355-597 |
| Cow position: | chrX:18699999-18699741 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 188 |
| Conread position: | 355-598 |
| Cow position: | chrX:17200761-17201006 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 355-598 |
| Cow position: | chrX:32049330-32049566 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 356-560 |
| Cow position: | chrX:34424216-34424425 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 356-598 |
| Cow position: | chrX:18293986-18294218 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 357-580 |
| Cow position: | chrX:13852523-13852743 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 357-587 |
| Cow position: | chrX:21206081-21205863 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 357-589 |
| Cow position: | chrX:42218915-42219147 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 357-597 |
| Cow position: | chrX:27024202-27024428 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 357-598 |
| Cow position: | chrX:17265043-17264807 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 357-600 |
| Cow position: | chrX:2650060-2649815 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 357-600 |
| Cow position: | chrX:6277393-6277168 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 358-565 |
| Cow position: | chrX:6380869-6381078 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 358-588 |
| Cow position: | chrX:25261394-25261161 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 358-592 |
| Cow position: | chrX:15643331-15643099 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 358-598 |
| Cow position: | chrX:19210343-19210111 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 359-599 |
| Cow position: | chrX:25707774-25707539 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 360-575 |
| Cow position: | chrX:31059163-31059388 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 361-598 |
| Cow position: | chrX:22859637-22859877 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 362-560 |
| Cow position: | chrX:34134234-34134429 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 363-598 |
| Cow position: | chrX:16341187-16341411 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 367-537 |
| Cow position: | chrX:38689023-38689192 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 367-585 |
| Cow position: | chrX:46372690-46372465 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 375-559 |
| Cow position: | chrX:38693627-38693809 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 375-587 |
| Cow position: | chrX:21262595-21262393 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 375-590 |
| Cow position: | chrX:30085122-30084907 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 164, 73 |
| Conread position: | 375-595 |
| Cow position: | chrX:15844157-15843933 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 375-597 |
| Cow position: | chrX:6570182-6570395 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 382-596 |
| Cow position: | chrX:47314526-47314742 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 122, 79 |
| Conread position: | 388-592 |
| Cow position: | chrX:19976918-19976709 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 397-598 |
| Cow position: | chrX:19093946-19093746 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 104, 56 |
| Conread position: | 413-590 |
| Cow position: | chrX:40342640-40342818 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 413-596 |
| Cow position: | chrX:40333998-40333819 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 8 |
| Conread position: | 419-598 |
| Cow position: | chrX:25824173-25823992 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 419-598 |
| Cow position: | chrX:31473814-31473992 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 421-587 |
| Cow position: | chrX:32736189-32736024 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 424-587 |
| Cow position: | chrX:30876170-30875998 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 6 |
| Conread position: | 428-592 |
| Cow position: | chrX:4162973-4162814 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 431-591 |
| Cow position: | chrX:503114-502951 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 432-600 |
| Cow position: | chrX:42529624-42529451 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 433-585 |
| Cow position: | chrX:29925432-29925288 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 459-587 |
| Cow position: | chrX:36029087-36029218 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 461-590 |
| Cow position: | chrX:34071859-34071991 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 461-593 |
| Cow position: | chrX:30958180-30958048 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 461-596 |
| Cow position: | chrX:41303044-41302905 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 463-591 |
| Cow position: | chrX:2628489-2628358 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 463-596 |
| Cow position: | chrX:8558351-8558214 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 463-596 |
| Cow position: | chrX:11675178-11675315 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 469-600 |
| Cow position: | chrX:25281353-25281222 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-600 |
| Cow position: | chrX:39935946-39935830 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 482-586 |
| Cow position: | chrX:18517918-18518025 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.