Cow genome map
| Conread name: | Ss1.1-Pig1-38B05.5 |
| Conread position: | 44-225 |
| Cow position: | chr1:62467993-62467804 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 143, 46 |
| Conread position: | 48-230 |
| Cow position: | chr1:89932897-89933091 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 66, 88 |
| Conread position: | 49-161 |
| Cow position: | chr1:88257833-88257721 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-180 |
| Cow position: | chr1:33615373-33615504 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-180 |
| Cow position: | chr1:54388726-54388597 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 49-181 |
| Cow position: | chr1:57792825-57792701 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 49-182 |
| Cow position: | chr1:22849165-22849296 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 49-184 |
| Cow position: | chr1:33073420-33073554 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 49-185 |
| Cow position: | chr1:14782648-14782783 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 49-185 |
| Cow position: | chr1:38239804-38239941 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 49-185 |
| Cow position: | chr1:76791542-76791405 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 49-185 |
| Cow position: | chr1:88264456-88264324 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 49-189 |
| Cow position: | chr1:99339539-99339401 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 49-198 |
| Cow position: | chr1:2287926-2288071 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 49-228 |
| Cow position: | chr1:42889486-42889309 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-229 |
| Cow position: | chr1:29910774-29910582 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 49-229 |
| Cow position: | chr1:60311030-60311230 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:3370033-3369840 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:7714349-7714542 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:10980008-10979835 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:15957745-15957553 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:22696957-22696765 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 136, 37 |
| Conread position: | 49-230 |
| Cow position: | chr1:26705903-26706096 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:26855141-26855333 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 49-230 |
| Cow position: | chr1:42880235-42880042 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:44983955-44983763 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 136, 179 |
| Conread position: | 49-230 |
| Cow position: | chr1:45023155-45023345 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 49-230 |
| Cow position: | chr1:56256600-56256793 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:57518386-57518587 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:66263282-66263472 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:71315496-71315303 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:79118051-79117864 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:81399800-81399608 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 49-230 |
| Cow position: | chr1:83005442-83005260 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 125, 21 |
| Conread position: | 49-230 |
| Cow position: | chr1:85245335-85245143 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 138, 106 |
| Conread position: | 49-230 |
| Cow position: | chr1:85714471-85714276 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:87848619-87848813 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 49-230 |
| Cow position: | chr1:97080378-97080186 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 138, 77 |
| Conread position: | 49-232 |
| Cow position: | chr1:97022153-97021964 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 22 |
| Conread position: | 49-233 |
| Cow position: | chr1:61615629-61615433 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-234 |
| Cow position: | chr1:82167440-82167244 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 138, 15 |
| Conread position: | 49-235 |
| Cow position: | chr1:63937033-63937231 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 161 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-247 |
| Cow position: | chr1:48628399-48628191 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 136, 190 |
| Conread position: | 49-247 |
| Cow position: | chr1:65670465-65670675 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 50-230 |
| Cow position: | chr1:37082395-37082586 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 99 |
| Conread position: | 50-230 |
| Cow position: | chr1:56673649-56673835 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 51-230 |
| Cow position: | chr1:76782223-76782031 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 51-233 |
| Cow position: | chr1:81286586-81286780 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 51-237 |
| Cow position: | chr1:95191844-95191641 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 53-230 |
| Cow position: | chr1:28291456-28291639 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 131, 63 |
| Conread position: | 55-185 |
| Cow position: | chr1:79823908-79823778 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-230 |
| Cow position: | chr1:51846959-51846798 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 77-243 |
| Cow position: | chr1:68030924-68031102 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 110, 0 |
Show alignments to all cow chromosomes.