Cow genome map
| Conread name: | Ss1.1-Pig1-38B05.5 |
| Conread position: | 49-181 |
| Cow position: | chr3:24258256-24258124 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-183 |
| Cow position: | chr3:45551162-45551030 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 49-184 |
| Cow position: | chr3:50525493-50525624 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 49-185 |
| Cow position: | chr3:814863-814732 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 49-185 |
| Cow position: | chr3:12276899-12276763 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-185 |
| Cow position: | chr3:13318210-13318074 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 49-185 |
| Cow position: | chr3:39855701-39855837 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-185 |
| Cow position: | chr3:60959917-60960053 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-186 |
| Cow position: | chr3:64420114-64419980 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 49-224 |
| Cow position: | chr3:2345070-2344885 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 49-227 |
| Cow position: | chr3:3910312-3910500 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 49-228 |
| Cow position: | chr3:26019143-26019332 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 138, 124 |
| Conread position: | 49-228 |
| Cow position: | chr3:77433965-77433777 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 59 |
| Conread position: | 49-229 |
| Cow position: | chr3:66115856-66116044 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 138, 59 |
| Conread position: | 49-230 |
| Cow position: | chr3:62054-61863 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 49-230 |
| Cow position: | chr3:6850005-6850198 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:9623611-9623787 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:18676427-18676238 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 108, 58 |
| Conread position: | 49-230 |
| Cow position: | chr3:18723065-18722871 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:29323784-29323973 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:45656758-45656949 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 36 |
| Conread position: | 49-230 |
| Cow position: | chr3:52826727-52826911 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:55895631-55895442 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 138, 67 |
| Conread position: | 49-230 |
| Cow position: | chr3:60001691-60001498 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:62810146-62809956 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 138, 27 |
| Conread position: | 49-230 |
| Cow position: | chr3:63062365-63062168 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:65058153-65058347 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:67754794-67754988 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:78595863-78596053 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 49-230 |
| Cow position: | chr3:82455885-82455695 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 140, 19 |
| Conread position: | 49-230 |
| Cow position: | chr3:85243678-85243875 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 49-233 |
| Cow position: | chr3:28598405-28598586 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 147, 89 |
| Conread position: | 49-233 |
| Cow position: | chr3:50980752-50980944 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 138, 59 |
| Conread position: | 49-237 |
| Cow position: | chr3:10458092-10458294 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 49-245 |
| Cow position: | chr3:26754522-26754319 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 138, 37 |
| Conread position: | 51-230 |
| Cow position: | chr3:54585116-54585305 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 136, 65 |
| Conread position: | 54-230 |
| Cow position: | chr3:66910096-66909909 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 52, 105 |
| Conread position: | 55-233 |
| Cow position: | chr3:15190519-15190331 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 132, 61 |
| Conread position: | 83-184 |
| Cow position: | chr3:605875-605975 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 86-230 |
| Cow position: | chr3:3700457-3700613 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 101, 0 |
Show alignments to all cow chromosomes.