Cow genome map

Conread name: Ss1.1-Pig1-3A18.5

Conread position: 440-589
Cow position: chr12:15240851-15240702 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 27, 5

Conread position: 440-617
Cow position: chr12:41083942-41084120 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 5

Conread position: 440-682
Cow position: chr12:25444799-25445043 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 6

Conread position: 444-613
Cow position: chr12:3092697-3092520 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 445-622
Cow position: chr12:25177706-25177529 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 45, 94

Conread position: 445-628
Cow position: chr12:7311273-7311456 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 45

Conread position: 445-628
Cow position: chr12:24116486-24116288 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 86

Conread position: 445-629
Cow position: chr12:9229605-9229424 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 15

Conread position: 445-646
Cow position: chr12:25561247-25561461 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 54, 127

Conread position: 445-647
Cow position: chr12:37170066-37169852 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 31

Conread position: 446-628
Cow position: chr12:18123558-18123744 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 0

Conread position: 446-647
Cow position: chr12:33129140-33129348 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 447-652
Cow position: chr12:22485698-22485904 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 10

Conread position: 449-700
Cow position: chr12:39486320-39486563 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 7

Conread position: 457-625
Cow position: chr12:24167040-24166872 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 25

Conread position: 460-647
Cow position: chr12:19274494-19274305 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 29, 98

Conread position: 468-628
Cow position: chr12:27357299-27357462 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 59

Conread position: 480-645
Cow position: chr12:15260690-15260854 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 123, 0

Conread position: 482-652
Cow position: chr12:36261618-36261789 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 142, 0

Conread position: 488-627
Cow position: chr12:25805198-25805058 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 39

Conread position: 489-616
Cow position: chr12:18518609-18518736 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 489-708
Cow position: chr12:33319734-33319515 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 12, 136

Conread position: 490-628
Cow position: chr12:44203047-44202912 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 490-651
Cow position: chr12:36544705-36544543 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 8

Conread position: 490-659
Cow position: chr12:30819181-30819346 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 135, 0

Conread position: 490-707
Cow position: chr12:45028294-45028495 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 61

Conread position: 491-620
Cow position: chr12:18577777-18577907 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 491-622
Cow position: chr12:24032434-24032565 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 491-622
Cow position: chr12:30170607-30170737 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 50

Conread position: 491-623
Cow position: chr12:30745658-30745786 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 43

Conread position: 491-627
Cow position: chr12:5905994-5906130 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr12:6241257-6241394 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr12:7884743-7884606 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr12:17879363-17879227 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 491-628
Cow position: chr12:26151522-26151385 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 123, 60

Conread position: 491-628
Cow position: chr12:37514343-37514207 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 123, 0

Conread position: 491-628
Cow position: chr12:45092384-45092521 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr12:46120896-46120757 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 491-629
Cow position: chr12:19261133-19261271 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 491-629
Cow position: chr12:19502490-19502352 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 491-629
Cow position: chr12:39465517-39465655 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 491-645
Cow position: chr12:16670205-16670359 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 132, 115

Conread position: 491-645
Cow position: chr12:17252260-17252108 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 491-646
Cow position: chr12:11056813-11056966 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 133

Conread position: 491-646
Cow position: chr12:12232821-12232974 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 85, 63

Conread position: 491-646
Cow position: chr12:15089454-15089611 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 134, 81

Conread position: 491-646
Cow position: chr12:33948842-33948996 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 139, 0

Conread position: 491-646
Cow position: chr12:46464129-46463976 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 139, 22

Conread position: 491-652
Cow position: chr12:15703559-15703399 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 491-661
Cow position: chr12:11659866-11660026 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 82, 0

Conread position: 491-670
Cow position: chr12:6410797-6410618 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 140

Conread position: 491-672
Cow position: chr12:32714984-32715164 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 165, 34

Conread position: 491-682
Cow position: chr12:1766852-1767037 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 174, 9

Conread position: 491-706
Cow position: chr12:29770634-29770430 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 193, 61

Conread position: 491-708
Cow position: chr12:6720263-6720472 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 130

Conread position: 491-709
Cow position: chr12:27037512-27037291 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 185, 139

Conread position: 492-622
Cow position: chr12:32169480-32169609 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 492-626
Cow position: chr12:9143327-9143460 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 492-628
Cow position: chr12:9766938-9766802 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 492-629
Cow position: chr12:23644865-23644727 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 492-646
Cow position: chr12:18583053-18582901 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 492-651
Cow position: chr12:26777250-26777094 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 492-653
Cow position: chr12:42879633-42879793 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 120, 0

Conread position: 492-668
Cow position: chr12:18020797-18020973 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 131, 66

Conread position: 492-708
Cow position: chr12:5839717-5839498 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 175

Conread position: 493-623
Cow position: chr12:15641168-15641037 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 53, 0

Conread position: 493-628
Cow position: chr12:19507577-19507712 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 496-628
Cow position: chr12:26575839-26575970 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 496-629
Cow position: chr12:17269745-17269878 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 496-629
Cow position: chr12:19691288-19691158 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 496-630
Cow position: chr12:15429653-15429519 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 99
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 496-646
Cow position: chr12:3371599-3371452 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 128, 53

Conread position: 496-707
Cow position: chr12:45820423-45820204 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 112, 107

Conread position: 500-630
Cow position: chr12:11836181-11836311 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 97
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 502-628
Cow position: chr12:15122273-15122401 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 502-628
Cow position: chr12:30210432-30210558 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 502-642
Cow position: chr12:5554385-5554246 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 128, 0

Conread position: 502-647
Cow position: chr12:6139631-6139486 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 7

Conread position: 502-674
Cow position: chr12:17774743-17774916 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 101

Conread position: 503-626
Cow position: chr12:30605215-30605093 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 503-652
Cow position: chr12:25814097-25814251 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 31, 133

Conread position: 504-653
Cow position: chr12:24663065-24663214 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 505-707
Cow position: chr12:45723268-45723468 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 125, 35

Conread position: 506-661
Cow position: chr12:24437682-24437530 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 507-628
Cow position: chr12:23714628-23714750 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 508-628
Cow position: chr12:48578798-48578917 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 508-653
Cow position: chr12:14986704-14986849 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 122, 106

Conread position: 512-646
Cow position: chr12:29731273-29731406 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 0

Conread position: 513-707
Cow position: chr12:27572280-27572086 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 178, 117

Show alignments to all cow chromosomes.