Cow genome map

Conread name: Ss1.1-Pig1-3A18.5

Conread position: 5-412
Cow position: chr20:14526781-14527178 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 154

Conread position: 433-627
Cow position: chr20:20099650-20099445 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 433-643
Cow position: chr20:9412436-9412658 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 41, 12

Conread position: 440-620
Cow position: chr20:26077703-26077520 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 41, 5

Conread position: 440-658
Cow position: chr20:34202604-34202820 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 5

Conread position: 445-616
Cow position: chr20:22265287-22265108 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 445-622
Cow position: chr20:11542325-11542137 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 445-622
Cow position: chr20:38670717-38670900 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 445-623
Cow position: chr20:16935341-16935164 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 35, 95

Conread position: 445-628
Cow position: chr20:2298819-2298634 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 152

Conread position: 445-628
Cow position: chr20:7738268-7738075 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 445-628
Cow position: chr20:31746670-31746480 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 29

Conread position: 445-629
Cow position: chr20:382155-381975 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 445-635
Cow position: chr20:23792568-23792767 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 445-643
Cow position: chr20:27407916-27407723 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 59, 144

Conread position: 445-646
Cow position: chr20:3255006-3255210 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 20

Conread position: 445-653
Cow position: chr20:26996492-26996709 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 157

Conread position: 445-657
Cow position: chr20:38514740-38514966 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 32, 164

Conread position: 445-665
Cow position: chr20:19091161-19090948 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 445-679
Cow position: chr20:5636442-5636688 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 446-629
Cow position: chr20:13752193-13752382 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 447-628
Cow position: chr20:2204709-2204530 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 447-628
Cow position: chr20:38768496-38768306 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 108

Conread position: 447-691
Cow position: chr20:39398446-39398699 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 193

Conread position: 468-646
Cow position: chr20:3148678-3148859 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 470-652
Cow position: chr20:4892123-4891942 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 162

Conread position: 481-626
Cow position: chr20:8817483-8817337 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 488-628
Cow position: chr20:18320777-18320638 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 68

Conread position: 488-676
Cow position: chr20:17845977-17846166 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 132
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 132, 49

Conread position: 488-707
Cow position: chr20:2169709-2169487 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 29

Conread position: 489-628
Cow position: chr20:398289-398151 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 120, 0

Conread position: 489-628
Cow position: chr20:25009614-25009476 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 489-646
Cow position: chr20:11550386-11550542 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 151, 65

Conread position: 489-682
Cow position: chr20:26723661-26723469 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 162, 112

Conread position: 490-628
Cow position: chr20:7426179-7426041 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 490-646
Cow position: chr20:25162107-25161954 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 34, 8

Conread position: 491-607
Cow position: chr20:1009687-1009571 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-615
Cow position: chr20:33363537-33363661 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 491-622
Cow position: chr20:19363343-19363213 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 491-623
Cow position: chr20:8578268-8578400 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 491-627
Cow position: chr20:7756603-7756470 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 491-627
Cow position: chr20:12581935-12581799 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr20:8547087-8547222 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 73

Conread position: 491-628
Cow position: chr20:8556249-8556113 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 491-628
Cow position: chr20:19459646-19459509 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr20:20158155-20158292 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr20:24097020-24097157 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr20:35445084-35444947 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr20:38089932-38090069 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 491-646
Cow position: chr20:12239662-12239510 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 64

Conread position: 491-646
Cow position: chr20:28982721-28982874 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 491-646
Cow position: chr20:32463501-32463349 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 133, 45

Conread position: 491-649
Cow position: chr20:12420599-12420444 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 491-651
Cow position: chr20:17100382-17100541 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 491-652
Cow position: chr20:15529880-15530039 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 491-653
Cow position: chr20:5702743-5702904 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 139, 0

Conread position: 491-653
Cow position: chr20:18379398-18379560 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 133, 83

Conread position: 491-654
Cow position: chr20:2819564-2819728 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 134, 14

Conread position: 491-656
Cow position: chr20:21815580-21815742 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 138, 0

Conread position: 491-687
Cow position: chr20:22978346-22978545 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 141, 0

Conread position: 491-707
Cow position: chr20:40157919-40158133 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 200, 139

Conread position: 491-716
Cow position: chr20:24069825-24070052 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 121

Conread position: 492-616
Cow position: chr20:28441347-28441471 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 492-617
Cow position: chr20:20203238-20203363 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 492-619
Cow position: chr20:6358640-6358767 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 492-619
Cow position: chr20:31740200-31740075 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 5, 102

Conread position: 492-630
Cow position: chr20:14806907-14807045 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 492-653
Cow position: chr20:3564180-3564336 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 493-627
Cow position: chr20:8912478-8912343 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 493-628
Cow position: chr20:32847366-32847501 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 493-653
Cow position: chr20:22030343-22030499 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 494-644
Cow position: chr20:39155437-39155585 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 495-628
Cow position: chr20:36207837-36207970 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 496-628
Cow position: chr20:19060813-19060683 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 37, 59

Conread position: 496-646
Cow position: chr20:28605234-28605382 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 125
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 55, 0

Conread position: 497-653
Cow position: chr20:15766135-15766295 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 498-619
Cow position: chr20:24315007-24314887 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 498-628
Cow position: chr20:36312482-36312352 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 104, 110

Conread position: 498-641
Cow position: chr20:22065098-22065234 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 498-644
Cow position: chr20:13269648-13269788 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 125, 11

Conread position: 502-628
Cow position: chr20:5078657-5078783 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 504-707
Cow position: chr20:33438948-33438752 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 187, 120

Conread position: 505-678
Cow position: chr20:11043439-11043263 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 124, 46

Conread position: 507-716
Cow position: chr20:19636141-19635928 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 154, 123

Conread position: 511-651
Cow position: chr20:630564-630707 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 112, 22

Conread position: 513-647
Cow position: chr20:26041057-26040922 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 517-628
Cow position: chr20:20590256-20590145 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 518-652
Cow position: chr20:19834784-19834650 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 519-707
Cow position: chr20:3781158-3780973 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 129, 0

Show alignments to all cow chromosomes.