Cow genome map

Conread name: Ss1.1-Pig1-3A18.5

Conread position: 440-669
Cow position: chr21:46264147-46264389 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 60, 5

Conread position: 444-651
Cow position: chr21:23822145-23822348 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 149

Conread position: 444-657
Cow position: chr21:41522429-41522212 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 50, 120

Conread position: 445-616
Cow position: chr21:29214166-29213995 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 53, 12

Conread position: 445-627
Cow position: chr21:27810387-27810563 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 445-628
Cow position: chr21:82058-82244 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 445-628
Cow position: chr21:14126267-14126454 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 53, 11

Conread position: 445-628
Cow position: chr21:28442725-28442909 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 20

Conread position: 445-628
Cow position: chr21:32297528-32297342 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 16

Conread position: 445-628
Cow position: chr21:33210181-33210365 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 49, 0

Conread position: 445-628
Cow position: chr21:42348695-42348519 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 445-679
Cow position: chr21:734575-734816 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 28

Conread position: 445-679
Cow position: chr21:27624688-27624922 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 44

Conread position: 446-655
Cow position: chr21:9990504-9990711 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 10

Conread position: 446-708
Cow position: chr21:30250216-30249951 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 193
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 117

Conread position: 447-625
Cow position: chr21:38268064-38267888 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 452-628
Cow position: chr21:802321-802140 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 457-585
Cow position: chr21:724882-724751 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 95

Conread position: 473-628
Cow position: chr21:28191057-28191209 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 473-679
Cow position: chr21:10633613-10633414 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 477-693
Cow position: chr21:30835392-30835606 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 147, 55

Conread position: 478-628
Cow position: chr21:26244941-26245091 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 480-646
Cow position: chr21:42135588-42135422 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 13, 151

Conread position: 480-708
Cow position: chr21:5392506-5392279 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 63, 9

Conread position: 488-601
Cow position: chr21:7088637-7088750 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 488-620
Cow position: chr21:20260282-20260150 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 128, 114

Conread position: 489-627
Cow position: chr21:33982769-33982634 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 489-628
Cow position: chr21:37299500-37299639 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 489-629
Cow position: chr21:32559325-32559187 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 489-653
Cow position: chr21:34654112-34654274 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 490-661
Cow position: chr21:27569130-27568965 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 63, 0

Conread position: 491-601
Cow position: chr21:12104405-12104516 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 491-620
Cow position: chr21:44214167-44214295 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 491-628
Cow position: chr21:643365-643501 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 115
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 491-628
Cow position: chr21:16498559-16498693 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 491-628
Cow position: chr21:19868914-19868778 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 491-628
Cow position: chr21:30980537-30980401 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 491-628
Cow position: chr21:45262770-45262633 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr21:46451912-46451777 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 26, 0

Conread position: 491-628
Cow position: chr21:47719259-47719126 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 491-629
Cow position: chr21:12723195-12723329 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 27, 13

Conread position: 491-629
Cow position: chr21:30222385-30222523 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 491-631
Cow position: chr21:47465078-47464939 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 491-646
Cow position: chr21:21615822-21615976 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 139, 0

Conread position: 491-646
Cow position: chr21:39393788-39393945 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 110, 0

Conread position: 491-647
Cow position: chr21:71627-71782 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 0

Conread position: 491-647
Cow position: chr21:829168-829014 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 85, 79

Conread position: 491-647
Cow position: chr21:11644926-11644770 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 491-647
Cow position: chr21:20163748-20163904 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 491-647
Cow position: chr21:28599929-28600079 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 53

Conread position: 491-648
Cow position: chr21:11740079-11739924 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 85, 0

Conread position: 491-653
Cow position: chr21:641627-641788 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 139, 0

Conread position: 491-653
Cow position: chr21:29069287-29069125 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 140

Conread position: 491-653
Cow position: chr21:41287753-41287592 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 139, 0

Conread position: 491-656
Cow position: chr21:35437447-35437285 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 103, 0

Conread position: 491-657
Cow position: chr21:29485022-29485183 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 491-659
Cow position: chr21:36682365-36682532 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 132, 0

Conread position: 491-668
Cow position: chr21:11057838-11057665 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 65, 0

Conread position: 491-674
Cow position: chr21:12801709-12801523 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 491-679
Cow position: chr21:7268842-7268653 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 134, 60

Conread position: 491-681
Cow position: chr21:42384548-42384738 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 492-601
Cow position: chr21:42540181-42540072 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 492-620
Cow position: chr21:31147893-31147766 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 21, 0

Conread position: 492-622
Cow position: chr21:38121142-38121272 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 492-623
Cow position: chr21:297795-297926 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 492-628
Cow position: chr21:8426487-8426622 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 0

Conread position: 492-628
Cow position: chr21:19240832-19240695 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 128, 0

Conread position: 492-628
Cow position: chr21:27229750-27229618 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 492-643
Cow position: chr21:36297534-36297685 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 492-651
Cow position: chr21:22850963-22851119 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 493-613
Cow position: chr21:20183113-20183233 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 493-616
Cow position: chr21:46599403-46599523 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 107, 0

Conread position: 493-646
Cow position: chr21:24875394-24875549 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 493-647
Cow position: chr21:17252936-17252781 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 127, 51

Conread position: 494-628
Cow position: chr21:24858358-24858492 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 496-625
Cow position: chr21:30592259-30592135 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 496-628
Cow position: chr21:16569946-16570076 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 496-653
Cow position: chr21:41590520-41590362 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 0

Conread position: 496-657
Cow position: chr21:5342049-5341888 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 145, 127

Conread position: 496-672
Cow position: chr21:18800494-18800314 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 140

Conread position: 497-628
Cow position: chr21:25764682-25764812 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 497-628
Cow position: chr21:41046853-41046983 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 497-679
Cow position: chr21:19360130-19359948 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 172, 133

Conread position: 499-629
Cow position: chr21:30243633-30243503 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 500-660
Cow position: chr21:44825840-44825679 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 126

Conread position: 502-668
Cow position: chr21:14228229-14228061 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 128, 0

Conread position: 502-670
Cow position: chr21:36795654-36795821 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 128, 0

Conread position: 502-679
Cow position: chr21:5149247-5149427 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 132

Conread position: 502-679
Cow position: chr21:13365394-13365569 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 502-695
Cow position: chr21:7581854-7581660 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 128, 180

Conread position: 502-708
Cow position: chr21:33350792-33351002 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 128, 174

Conread position: 503-677
Cow position: chr21:5486462-5486286 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 63, 123

Conread position: 504-628
Cow position: chr21:11182606-11182728 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 504-628
Cow position: chr21:25012135-25012258 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 505-627
Cow position: chr21:15012493-15012615 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 506-661
Cow position: chr21:41450437-41450592 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 61, 86

Conread position: 509-628
Cow position: chr21:8506488-8506369 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 509-628
Cow position: chr21:8509376-8509257 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 510-670
Cow position: chr21:29014500-29014340 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 513-629
Cow position: chr21:20174380-20174496 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 558-679
Cow position: chr21:40573952-40573831 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.