Cow genome map

Conread name: Ss1.1-Pig1-3A18.5

Conread position: 431-647
Cow position: chr24:29540031-29539822 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 6, 66

Conread position: 444-653
Cow position: chr24:28062842-28063062 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 53, 30

Conread position: 445-628
Cow position: chr24:28233940-28234131 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 120

Conread position: 445-661
Cow position: chr24:11119176-11119400 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 446-589
Cow position: chr24:35675437-35675589 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 42, 30

Conread position: 447-628
Cow position: chr24:19186849-19187026 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 96

Conread position: 447-629
Cow position: chr24:29063761-29063569 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 50, 83

Conread position: 447-639
Cow position: chr24:1269685-1269883 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 116

Conread position: 447-653
Cow position: chr24:31359217-31359434 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 156

Conread position: 448-628
Cow position: chr24:23695001-23694812 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 450-630
Cow position: chr24:41405793-41405984 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 184

Conread position: 464-623
Cow position: chr24:33222017-33221848 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 466-659
Cow position: chr24:17375561-17375758 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 0

Conread position: 466-703
Cow position: chr24:15263806-15264040 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 31

Conread position: 468-644
Cow position: chr24:25122267-25122446 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 24, 48

Conread position: 474-629
Cow position: chr24:42981825-42981672 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 83

Conread position: 478-629
Cow position: chr24:27608159-27608018 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 478-652
Cow position: chr24:13948062-13948233 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 145, 85

Conread position: 480-627
Cow position: chr24:29673462-29673609 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 12, 127

Conread position: 488-622
Cow position: chr24:19736387-19736252 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 132

Conread position: 488-628
Cow position: chr24:5141890-5142031 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 27

Conread position: 488-628
Cow position: chr24:24662186-24662042 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 488-682
Cow position: chr24:15373354-15373547 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 133, 0

Conread position: 489-629
Cow position: chr24:43028378-43028240 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 489-646
Cow position: chr24:3165768-3165925 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 489-651
Cow position: chr24:5360669-5360827 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 489-653
Cow position: chr24:10499163-10499326 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 75

Conread position: 490-620
Cow position: chr24:18732151-18732021 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-627
Cow position: chr24:29985033-29984896 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 490-690
Cow position: chr24:42639298-42639107 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 491-619
Cow position: chr24:27726060-27725932 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 491-626
Cow position: chr24:17860306-17860171 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 491-626
Cow position: chr24:27844576-27844441 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 491-627
Cow position: chr24:27824414-27824550 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 491-627
Cow position: chr24:28510749-28510881 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 491-627
Cow position: chr24:41916205-41916347 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 491-628
Cow position: chr24:5754788-5754924 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 106, 0

Conread position: 491-628
Cow position: chr24:18357100-18356963 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr24:24491065-24490929 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 96, 0

Conread position: 491-628
Cow position: chr24:27713453-27713316 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr24:30314074-30313937 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 123, 103

Conread position: 491-628
Cow position: chr24:31816530-31816667 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr24:37037852-37037991 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 491-628
Cow position: chr24:37651677-37651814 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 491-630
Cow position: chr24:18474777-18474639 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 132, 0

Conread position: 491-646
Cow position: chr24:14457769-14457618 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 491-646
Cow position: chr24:28496630-28496475 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-647
Cow position: chr24:15288779-15288935 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 491-651
Cow position: chr24:230230-230396 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 491-653
Cow position: chr24:37975029-37974868 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 139, 0

Conread position: 491-657
Cow position: chr24:27284773-27284932 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 491-667
Cow position: chr24:28042927-28043106 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 133, 0

Conread position: 491-700
Cow position: chr24:30308601-30308400 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 100, 0

Conread position: 491-708
Cow position: chr24:33153729-33153940 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 200, 48

Conread position: 491-708
Cow position: chr24:39791493-39791701 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 204, 132

Conread position: 492-628
Cow position: chr24:28319257-28319120 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 6, 0

Conread position: 492-656
Cow position: chr24:37650626-37650785 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 5, 96

Conread position: 492-657
Cow position: chr24:6912411-6912247 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 131, 0

Conread position: 492-708
Cow position: chr24:40983084-40983295 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 199, 48

Conread position: 493-620
Cow position: chr24:27748594-27748721 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 493-620
Cow position: chr24:30897582-30897457 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 493-628
Cow position: chr24:20364456-20364321 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 493-641
Cow position: chr24:2402414-2402265 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 493-647
Cow position: chr24:30235827-30235980 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 131, 61

Conread position: 493-651
Cow position: chr24:23186965-23186805 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 130, 0

Conread position: 496-616
Cow position: chr24:27740152-27740272 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 496-627
Cow position: chr24:21835002-21834872 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 496-628
Cow position: chr24:15246686-15246554 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 496-628
Cow position: chr24:22133128-22133260 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 496-630
Cow position: chr24:42687805-42687937 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 58

Conread position: 496-651
Cow position: chr24:37823484-37823640 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 126, 0

Conread position: 497-657
Cow position: chr24:43536912-43537071 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 104, 7

Conread position: 497-708
Cow position: chr24:28689624-28689833 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 135

Conread position: 499-628
Cow position: chr24:20874642-20874770 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 500-647
Cow position: chr24:27349213-27349070 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 500-651
Cow position: chr24:29561612-29561462 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 130, 0

Conread position: 502-648
Cow position: chr24:15347552-15347698 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 94, 102

Conread position: 502-652
Cow position: chr24:17104607-17104460 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 128, 0

Conread position: 503-628
Cow position: chr24:2588809-2588684 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 506-666
Cow position: chr24:7757739-7757899 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 124, 155

Conread position: 508-622
Cow position: chr24:12657080-12656966 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 511-653
Cow position: chr24:3412655-3412797 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 119, 107

Conread position: 514-679
Cow position: chr24:39806755-39806922 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 90

Conread position: 538-708
Cow position: chr24:39345373-39345206 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 92, 18

Conread position: 541-708
Cow position: chr24:38114851-38114682 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 22

Conread position: 545-708
Cow position: chr24:28186508-28186346 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 146, 0

Show alignments to all cow chromosomes.