Cow genome map

Conread name: Ss1.1-Pig1-3A18.5

Conread position: 432-682
Cow position: chr27:6073975-6073720 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 124

Conread position: 434-630
Cow position: chr27:12710293-12710089 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 27

Conread position: 440-628
Cow position: chr27:27460530-27460727 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 7

Conread position: 440-655
Cow position: chr27:28496334-28496555 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 35, 7

Conread position: 444-629
Cow position: chr27:19388056-19387861 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 38, 112

Conread position: 445-628
Cow position: chr27:14670343-14670539 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 445-628
Cow position: chr27:15315546-15315362 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 54, 93

Conread position: 445-628
Cow position: chr27:26506766-26506588 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 20

Conread position: 445-646
Cow position: chr27:27632565-27632772 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 137

Conread position: 445-653
Cow position: chr27:20481337-20481540 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 56, 14

Conread position: 445-671
Cow position: chr27:16589674-16589901 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 55, 20

Conread position: 446-628
Cow position: chr27:7412423-7412236 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 46, 10

Conread position: 446-630
Cow position: chr27:14343426-14343609 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 53, 95

Conread position: 449-652
Cow position: chr27:20629099-20628893 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 181

Conread position: 475-627
Cow position: chr27:6319915-6319763 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 477-629
Cow position: chr27:4673010-4672854 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 478-628
Cow position: chr27:15454201-15454054 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 478-708
Cow position: chr27:20795783-20795562 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 78, 0

Conread position: 480-629
Cow position: chr27:28206790-28206644 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 480-670
Cow position: chr27:18767073-18767259 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 486-623
Cow position: chr27:23890923-23890786 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 487-628
Cow position: chr27:12459269-12459132 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 51

Conread position: 487-648
Cow position: chr27:26407178-26407333 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 487-672
Cow position: chr27:22179784-22179964 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 68

Conread position: 488-623
Cow position: chr27:24440237-24440374 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 488-628
Cow position: chr27:31210533-31210392 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 62

Conread position: 489-643
Cow position: chr27:20067995-20068146 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 489-646
Cow position: chr27:29493915-29494076 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 489-652
Cow position: chr27:26239008-26238847 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 115

Conread position: 489-653
Cow position: chr27:23485191-23485030 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 65

Conread position: 490-622
Cow position: chr27:1123011-1122881 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 490-627
Cow position: chr27:20641354-20641489 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 113, 0

Conread position: 490-628
Cow position: chr27:23452442-23452305 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 490-646
Cow position: chr27:26617386-26617236 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 490-658
Cow position: chr27:21669137-21669302 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 490-711
Cow position: chr27:20758060-20758259 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 491-589
Cow position: chr27:21130286-21130188 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 491-607
Cow position: chr27:4812903-4813019 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 491-622
Cow position: chr27:8353456-8353328 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 491-627
Cow position: chr27:26999442-26999577 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 491-628
Cow position: chr27:17397474-17397611 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr27:23943127-23942990 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 491-628
Cow position: chr27:27055266-27055132 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 491-628
Cow position: chr27:28478560-28478423 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 491-629
Cow position: chr27:4944534-4944672 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-647
Cow position: chr27:15002998-15003155 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 131, 0

Conread position: 491-647
Cow position: chr27:26959636-26959790 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 13

Conread position: 491-650
Cow position: chr27:19685733-19685893 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 150, 0

Conread position: 491-652
Cow position: chr27:7343448-7343606 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 95, 119

Conread position: 491-653
Cow position: chr27:23560051-23560213 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 491-666
Cow position: chr27:30489430-30489604 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 139, 0

Conread position: 491-667
Cow position: chr27:20517638-20517469 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 491-669
Cow position: chr27:426949-426771 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 133, 63

Conread position: 491-672
Cow position: chr27:22348470-22348296 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 65

Conread position: 491-674
Cow position: chr27:24738818-24739003 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 80, 125

Conread position: 491-699
Cow position: chr27:15215209-15214997 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 115, 27

Conread position: 491-708
Cow position: chr27:23483204-23482980 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 138, 63

Conread position: 492-629
Cow position: chr27:8405842-8405979 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 112

Conread position: 492-653
Cow position: chr27:19508992-19508832 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 131, 0

Conread position: 492-653
Cow position: chr27:20828731-20828891 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 117, 0

Conread position: 492-658
Cow position: chr27:6674258-6674095 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 493-601
Cow position: chr27:16625875-16625770 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 493-622
Cow position: chr27:20092856-20092985 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 493-626
Cow position: chr27:4835628-4835763 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 493-627
Cow position: chr27:15409058-15409192 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 493-629
Cow position: chr27:23107926-23108060 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 128, 43

Conread position: 493-652
Cow position: chr27:22220532-22220373 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 493-666
Cow position: chr27:7212735-7212907 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 128, 0

Conread position: 495-629
Cow position: chr27:22035401-22035535 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 495-647
Cow position: chr27:26643659-26643515 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 496-628
Cow position: chr27:22171272-22171143 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 496-629
Cow position: chr27:788822-788954 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 123, 0

Conread position: 496-647
Cow position: chr27:6106675-6106528 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 497-651
Cow position: chr27:31169136-31169289 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 0

Conread position: 498-628
Cow position: chr27:16103780-16103655 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 500-653
Cow position: chr27:13204430-13204281 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 500-670
Cow position: chr27:237240-237075 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 75, 0

Conread position: 503-647
Cow position: chr27:24223922-24223776 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 60

Conread position: 504-657
Cow position: chr27:26323415-26323266 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 504-679
Cow position: chr27:11466498-11466672 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 115, 0

Conread position: 508-628
Cow position: chr27:19717878-19717758 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 511-628
Cow position: chr27:6496717-6496602 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 72

Conread position: 511-648
Cow position: chr27:19576363-19576499 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 517-646
Cow position: chr27:11134040-11133911 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 113, 41

Conread position: 517-649
Cow position: chr27:15859343-15859473 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 37

Conread position: 520-706
Cow position: chr27:17918766-17918950 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 171, 110

Conread position: 525-623
Cow position: chr27:4398545-4398643 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 527-646
Cow position: chr27:27528876-27528996 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 544-651
Cow position: chr27:31183503-31183397 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.