Cow genome map

Conread name: Ss1.1-Pig1-3A18.5

Conread position: 433-646
Cow position: chr29:5063049-5063275 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 440-628
Cow position: chr29:29176705-29176506 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 5

Conread position: 440-642
Cow position: chr29:36217027-36217236 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 5

Conread position: 444-653
Cow position: chr29:19125256-19125457 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 445-627
Cow position: chr29:32211142-32210961 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 20

Conread position: 445-628
Cow position: chr29:17109882-17110068 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 115

Conread position: 445-657
Cow position: chr29:34773820-34773597 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 213

Conread position: 445-678
Cow position: chr29:20903371-20903133 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 20

Conread position: 446-652
Cow position: chr29:9310532-9310734 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 117, 28

Conread position: 447-652
Cow position: chr29:12680074-12680290 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 40, 183

Conread position: 448-661
Cow position: chr29:36210077-36210279 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 29

Conread position: 457-626
Cow position: chr29:35501713-35501544 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 28

Conread position: 458-627
Cow position: chr29:32197637-32197807 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 458-656
Cow position: chr29:29324487-29324288 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 99

Conread position: 469-619
Cow position: chr29:24578816-24578965 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 469-628
Cow position: chr29:22735153-22734997 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 470-681
Cow position: chr29:40299067-40298859 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 137, 133

Conread position: 480-628
Cow position: chr29:19949273-19949418 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 9

Conread position: 480-671
Cow position: chr29:23243913-23243723 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 144, 9

Conread position: 486-646
Cow position: chr29:20770312-20770472 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 15, 72

Conread position: 488-647
Cow position: chr29:43099778-43099616 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 119

Conread position: 489-627
Cow position: chr29:34359006-34358868 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 489-628
Cow position: chr29:38980104-38979964 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 114

Conread position: 489-628
Cow position: chr29:41112907-41112770 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 490-650
Cow position: chr29:30708645-30708493 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 490-653
Cow position: chr29:30681736-30681574 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 140, 8

Conread position: 490-662
Cow position: chr29:31200232-31200405 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 149, 8

Conread position: 490-670
Cow position: chr29:34687809-34687987 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 491-588
Cow position: chr29:40634167-40634071 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 491-623
Cow position: chr29:26540566-26540435 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 491-624
Cow position: chr29:26615746-26615610 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 491-626
Cow position: chr29:25737440-25737305 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 491-627
Cow position: chr29:7624153-7624288 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 491-628
Cow position: chr29:1556906-1557042 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 491-628
Cow position: chr29:4874909-4874769 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 100

Conread position: 491-628
Cow position: chr29:9709668-9709806 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 491-628
Cow position: chr29:17804509-17804645 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 491-628
Cow position: chr29:40117546-40117682 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 491-629
Cow position: chr29:21285334-21285471 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 491-646
Cow position: chr29:38978506-38978661 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 132, 91

Conread position: 491-647
Cow position: chr29:30918523-30918674 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 133, 0

Conread position: 491-647
Cow position: chr29:44139269-44139114 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 111
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 491-648
Cow position: chr29:5892819-5892977 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 139, 0

Conread position: 491-652
Cow position: chr29:17222387-17222549 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 104

Conread position: 491-653
Cow position: chr29:26559269-26559111 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 491-661
Cow position: chr29:4480196-4480030 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 491-668
Cow position: chr29:23155202-23155375 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 133, 39

Conread position: 491-668
Cow position: chr29:28840130-28840304 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 139, 0

Conread position: 491-709
Cow position: chr29:32290583-32290799 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 192, 127

Conread position: 492-627
Cow position: chr29:5186518-5186383 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 492-627
Cow position: chr29:29769376-29769241 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 62

Conread position: 492-628
Cow position: chr29:19762246-19762379 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 492-629
Cow position: chr29:22723576-22723713 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 492-650
Cow position: chr29:36530842-36531002 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 147, 0

Conread position: 492-652
Cow position: chr29:45005652-45005493 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 135, 36

Conread position: 492-657
Cow position: chr29:8926486-8926322 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 138, 0

Conread position: 492-681
Cow position: chr29:11527815-11527633 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 63

Conread position: 492-707
Cow position: chr29:683515-683298 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 108

Conread position: 493-630
Cow position: chr29:742673-742536 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 493-647
Cow position: chr29:21666063-21666217 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 493-661
Cow position: chr29:23220523-23220357 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 92, 0

Conread position: 494-628
Cow position: chr29:29308595-29308460 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 496-619
Cow position: chr29:18012537-18012660 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 496-627
Cow position: chr29:4002870-4003002 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 63, 0

Conread position: 497-628
Cow position: chr29:7290756-7290887 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 497-628
Cow position: chr29:23825230-23825099 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 497-645
Cow position: chr29:39038289-39038140 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 126, 0

Conread position: 498-622
Cow position: chr29:22162268-22162144 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 501-629
Cow position: chr29:39111327-39111203 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 501-665
Cow position: chr29:40873995-40874157 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 129, 0

Conread position: 502-622
Cow position: chr29:17154764-17154883 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 502-656
Cow position: chr29:13639382-13639230 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 93

Conread position: 502-708
Cow position: chr29:13867225-13867018 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 189, 0

Conread position: 503-623
Cow position: chr29:29923587-29923468 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 503-628
Cow position: chr29:26756685-26756561 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 27, 106

Conread position: 504-628
Cow position: chr29:36781317-36781193 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 506-621
Cow position: chr29:19363700-19363814 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 525-660
Cow position: chr29:25288915-25288787 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 525-680
Cow position: chr29:43096782-43096931 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 527-706
Cow position: chr29:17022160-17022341 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 103, 0

Conread position: 537-661
Cow position: chr29:35071064-35070941 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 562-708
Cow position: chr29:6034096-6033952 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 129, 68

Show alignments to all cow chromosomes.