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Cow genome map

           
Conread name:
           
Ss1.1-Pig1-46K21.5
        

               
Conread position:
               
14-492
               

               
Cow position:
               
chr17:21739101-21738605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
16-408
               

               
Cow position:
               
chr17:4225708-4225332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
24-486
               

               
Cow position:
               
chr17:25815400-25815846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
25-343
               

               
Cow position:
               
chr17:32366079-32366391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
264, 13
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr17:30539456-30539158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
25-386
               

               
Cow position:
               
chr17:11172822-11172468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
25-456
               

               
Cow position:
               
chr17:5423278-5422856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 10
               

               
Conread position:
               
25-470
               

               
Cow position:
               
chr17:25900992-25901444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 10
               

               
Conread position:
               
26-214
               

               
Cow position:
               
chr17:1295777-1295591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
28-434
               

               
Cow position:
               
chr17:18109290-18108886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 7
               

               
Conread position:
               
28-470
               

               
Cow position:
               
chr17:29715390-29714978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
223, 7
               

               
Conread position:
               
34-345
               

               
Cow position:
               
chr17:40421469-40421777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
212, 120
               

               
Conread position:
               
34-484
               

               
Cow position:
               
chr17:7810938-7810496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 134
               

               
Conread position:
               
35-172
               

               
Cow position:
               
chr17:40406106-40406243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
35-214
               

               
Cow position:
               
chr17:6624060-6624235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
128, 78
               

               
Conread position:
               
35-226
               

               
Cow position:
               
chr17:16117627-16117434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 181
               

               
Conread position:
               
35-227
               

               
Cow position:
               
chr17:40312523-40312718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
35-248
               

               
Cow position:
               
chr17:21017596-21017803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
35-340
               

               
Cow position:
               
chr17:35126516-35126811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-346
               

               
Cow position:
               
chr17:21335896-21335585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
175, 198
               

               
Conread position:
               
35-346
               

               
Cow position:
               
chr17:24490323-24490648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
35-346
               

               
Cow position:
               
chr17:25796538-25796230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
126, 169
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr17:1275321-1275631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr17:31231312-31231015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
35-395
               

               
Cow position:
               
chr17:38832844-38833201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
193, 83
               

               
Conread position:
               
35-403
               

               
Cow position:
               
chr17:24553806-24554161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 136
               

               
Conread position:
               
35-403
               

               
Cow position:
               
chr17:39012520-39012880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 126
               

               
Conread position:
               
35-407
               

               
Cow position:
               
chr17:17405940-17406303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-460
               

               
Cow position:
               
chr17:23101409-23100996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 135
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr17:7132653-7132188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
125, 176
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr17:11101992-11101582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
249, 96
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr17:20993237-20992802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
126, 68
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr17:21434927-21434487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
175, 130
               

               
Conread position:
               
35-477
               

               
Cow position:
               
chr17:37163725-37163301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
174, 137
               

               
Conread position:
               
35-478
               

               
Cow position:
               
chr17:27429380-27429800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 134
               

               
Conread position:
               
35-478
               

               
Cow position:
               
chr17:33288852-33288414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 73
               

               
Conread position:
               
35-479
               

               
Cow position:
               
chr17:24587420-24587868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 174
               

               
Conread position:
               
35-484
               

               
Cow position:
               
chr17:9853788-9854232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-485
               

               
Cow position:
               
chr17:13922275-13922733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
35-487
               

               
Cow position:
               
chr17:11397468-11397920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
135, 161
               

               
Conread position:
               
35-488
               

               
Cow position:
               
chr17:11216081-11215639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-488
               

               
Cow position:
               
chr17:20780314-20780780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
249, 21
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr17:15103086-15102632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr17:18490335-18490791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
175, 54
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr17:38614758-38615225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
35-493
               

               
Cow position:
               
chr17:23246014-23246445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
175, 16
               

               
Conread position:
               
35-493
               

               
Cow position:
               
chr17:33792984-33793413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-496
               

               
Cow position:
               
chr17:32419316-32418855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 170
               

               
Conread position:
               
35-500
               

               
Cow position:
               
chr17:11381918-11381460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
35-531
               

               
Cow position:
               
chr17:6155843-6156328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
36-165
               

               
Cow position:
               
chr17:3153969-3153840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-407
               

               
Cow position:
               
chr17:9911566-9911927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
36-484
               

               
Cow position:
               
chr17:15664472-15664927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chr17:5767722-5768130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
38-483
               

               
Cow position:
               
chr17:4106180-4105743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 20
               

               
Conread position:
               
38-486
               

               
Cow position:
               
chr17:24973756-24974194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 101
               

               
Conread position:
               
39-249
               

               
Cow position:
               
chr17:21207329-21207126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
39-250
               

               
Cow position:
               
chr17:4436427-4436224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr17:32950078-32950316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 95
               

               
Conread position:
               
39-346
               

               
Cow position:
               
chr17:18592246-18592549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
209, 155
               

               
Conread position:
               
39-357
               

               
Cow position:
               
chr17:37482273-37481951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
77, 217
               

               
Conread position:
               
39-361
               

               
Cow position:
               
chr17:11156687-11156372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
245, 171
               

               
Conread position:
               
39-377
               

               
Cow position:
               
chr17:3503391-3503720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
39-396
               

               
Cow position:
               
chr17:43141910-43141550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
39-402
               

               
Cow position:
               
chr17:30718613-30718255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
127, 74
               

               
Conread position:
               
39-424
               

               
Cow position:
               
chr17:18495704-18495334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
218, 40
               

               
Conread position:
               
39-483
               

               
Cow position:
               
chr17:1035796-1035346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
39-519
               

               
Cow position:
               
chr17:20072269-20071818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
40-317
               

               
Cow position:
               
chr17:20839753-20839488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 11
               

               
Conread position:
               
40-361
               

               
Cow position:
               
chr17:21495182-21495493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
42-475
               

               
Cow position:
               
chr17:908555-908980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 75
               

               
Conread position:
               
42-485
               

               
Cow position:
               
chr17:25611902-25612338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
42-490
               

               
Cow position:
               
chr17:36790950-36791380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
42-495
               

               
Cow position:
               
chr17:32989298-32989733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
42-495
               

               
Cow position:
               
chr17:32993808-32993366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
45-318
               

               
Cow position:
               
chr17:1783798-1783526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 154
               

               
Conread position:
               
45-360
               

               
Cow position:
               
chr17:7697864-7698168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
45-451
               

               
Cow position:
               
chr17:18472987-18473380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
45-479
               

               
Cow position:
               
chr17:32471982-32471545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
46-408
               

               
Cow position:
               
chr17:20126426-20126766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
238, 92
               

               
Conread position:
               
54-391
               

               
Cow position:
               
chr17:12590984-12591327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 151
               

               
Conread position:
               
56-383
               

               
Cow position:
               
chr17:5006665-5006343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
58-208
               

               
Cow position:
               
chr17:22781512-22781663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
58-299
               

               
Cow position:
               
chr17:34207995-34207757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
196, 70
               

               
Conread position:
               
58-475
               

               
Cow position:
               
chr17:20033091-20032667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 153
               

               
Conread position:
               
60-483
               

               
Cow position:
               
chr17:1634655-1634245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
226, 19
               

               
Conread position:
               
61-492
               

               
Cow position:
               
chr17:25999944-26000376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
189, 72
               

               
Conread position:
               
63-179
               

               
Cow position:
               
chr17:20269432-20269544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
63-187
               

               
Cow position:
               
chr17:8644867-8644990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
63-196
               

               
Cow position:
               
chr17:5695118-5694988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
63-206
               

               
Cow position:
               
chr17:14088497-14088353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
63-207
               

               
Cow position:
               
chr17:27679414-27679266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr17:1358969-1358823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr17:27142586-27142738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr17:27667364-27667210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr17:32554196-32554046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 102
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr17:38116242-38116391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 39
               

               
Conread position:
               
63-248
               

               
Cow position:
               
chr17:3306697-3306873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
63-251
               

               
Cow position:
               
chr17:12216247-12216063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
63-251
               

               
Cow position:
               
chr17:34316879-34316694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
63-256
               

               
Cow position:
               
chr17:20835423-20835608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
101, 96
               

               
Conread position:
               
63-256
               

               
Cow position:
               
chr17:25755614-25755807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 117
               

               
Conread position:
               
63-258
               

               
Cow position:
               
chr17:35311251-35311443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 144
               

               
Conread position:
               
63-260
               

               
Cow position:
               
chr17:3442838-3442645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
147, 55
               

               
Conread position:
               
63-283
               

               
Cow position:
               
chr17:24549999-24550218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
63-325
               

               
Cow position:
               
chr17:12059261-12059007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
178, 53
               

               
Conread position:
               
63-325
               

               
Cow position:
               
chr17:15333881-15333624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
188, 69
               

               
Conread position:
               
63-344
               

               
Cow position:
               
chr17:34595769-34596045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
63-345
               

               
Cow position:
               
chr17:25541983-25541711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
187, 53
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr17:3781875-3782150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
126, 53
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr17:20889204-20889478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
190, 108
               

               
Conread position:
               
63-349
               

               
Cow position:
               
chr17:38200935-38200653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
63-358
               

               
Cow position:
               
chr17:20090791-20090518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
223, 44
               

               
Conread position:
               
63-358
               

               
Cow position:
               
chr17:38646894-38647180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
179, 53
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr17:19891445-19891746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
70, 147
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr17:41029783-41030060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
113, 53
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr17:41892238-41891939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
179, 98
               

               
Conread position:
               
63-365
               

               
Cow position:
               
chr17:923708-924005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
63-394
               

               
Cow position:
               
chr17:22806711-22806390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
67, 134
               

               
Conread position:
               
63-394
               

               
Cow position:
               
chr17:24580470-24580139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
63-397
               

               
Cow position:
               
chr17:20990364-20990030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
186, 53
               

               
Conread position:
               
63-397
               

               
Cow position:
               
chr17:26764843-26765183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 138
               

               
Conread position:
               
63-401
               

               
Cow position:
               
chr17:3683828-3683509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
239, 34
               

               
Conread position:
               
63-406
               

               
Cow position:
               
chr17:265486-265837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 155
               

               
Conread position:
               
63-406
               

               
Cow position:
               
chr17:1061232-1060876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
203, 23
               

               
Conread position:
               
63-406
               

               
Cow position:
               
chr17:1410413-1410068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 140
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr17:1493325-1492979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr17:24821696-24822031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
215, 53
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr17:40331595-40331934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr17:9117473-9117813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
230, 142
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr17:32273854-32273518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
212, 39
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr17:40289174-40288830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
63-413
               

               
Cow position:
               
chr17:8690610-8690277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
63-437
               

               
Cow position:
               
chr17:25097292-25097656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
300, 34
               

               
Conread position:
               
63-454
               

               
Cow position:
               
chr17:6566301-6566704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 44
               

               
Conread position:
               
63-460
               

               
Cow position:
               
chr17:1063019-1063394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
223, 50
               

               
Conread position:
               
63-460
               

               
Cow position:
               
chr17:36331136-36330741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
63-463
               

               
Cow position:
               
chr17:28285198-28284807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
63-463
               

               
Cow position:
               
chr17:30529706-30529318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
63-470
               

               
Cow position:
               
chr17:40741477-40741890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
98, 68
               

               
Conread position:
               
63-471
               

               
Cow position:
               
chr17:10446746-10447150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
300, 98
               

               
Conread position:
               
63-471
               

               
Cow position:
               
chr17:21115118-21114718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 35
               

               
Conread position:
               
63-472
               

               
Cow position:
               
chr17:26230769-26231203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
113, 98
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr17:8837119-8836710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr17:11832309-11831877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr17:12536638-12536230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 55
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr17:25128519-25128113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 10
               

               
Conread position:
               
63-482
               

               
Cow position:
               
chr17:21004001-21003582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 67
               

               
Conread position:
               
63-482
               

               
Cow position:
               
chr17:30665102-30665516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
98, 68
               

               
Conread position:
               
63-483
               

               
Cow position:
               
chr17:11618410-11618836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 86
               

               
Conread position:
               
63-483
               

               
Cow position:
               
chr17:21973303-21972878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
179, 53
               

               
Conread position:
               
63-483
               

               
Cow position:
               
chr17:41290188-41289795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
178, 26
               

               
Conread position:
               
63-484
               

               
Cow position:
               
chr17:11664761-11664326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 39
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr17:12447569-12447151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 42
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr17:27274392-27274820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr17:33275916-33275509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
176, 64
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr17:10459106-10458682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
200, 49
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr17:26818623-26818219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
186, 142
               

               
Conread position:
               
63-489
               

               
Cow position:
               
chr17:20157445-20157862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 45
               

               
Conread position:
               
63-489
               

               
Cow position:
               
chr17:24824082-24824502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 50
               

               
Conread position:
               
63-489
               

               
Cow position:
               
chr17:32279077-32278648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
236, 69
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr17:25189109-25189548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 147
               

               
Conread position:
               
63-491
               

               
Cow position:
               
chr17:18860889-18860487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
63-491
               

               
Cow position:
               
chr17:20932159-20932588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 52
               

               
Conread position:
               
63-491
               

               
Cow position:
               
chr17:35388183-35387763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr17:6423590-6424012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 35
               

               
Conread position:
               
63-493
               

               
Cow position:
               
chr17:1256674-1256241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
177, 109
               

               
Conread position:
               
63-497
               

               
Cow position:
               
chr17:3577368-3577794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 147
               

               
Conread position:
               
63-498
               

               
Cow position:
               
chr17:40771660-40772096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 150
               

               
Conread position:
               
63-499
               

               
Cow position:
               
chr17:4601718-4601297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
224, 147
               

               
Conread position:
               
63-500
               

               
Cow position:
               
chr17:12108633-12109072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
63-500
               

               
Cow position:
               
chr17:17059269-17059685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
186, 46
               

               
Conread position:
               
63-500
               

               
Cow position:
               
chr17:24149007-24149454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
146, 109
               

               
Conread position:
               
63-502
               

               
Cow position:
               
chr17:14033814-14033371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
191, 136
               

               
Conread position:
               
63-511
               

               
Cow position:
               
chr17:24787191-24786747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 98
               

               
Conread position:
               
64-214
               

               
Cow position:
               
chr17:3182754-3182606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
146, 46
               

               
Conread position:
               
64-255
               

               
Cow position:
               
chr17:24761395-24761213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
176, 68
               

               
Conread position:
               
64-394
               

               
Cow position:
               
chr17:9746349-9746668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
184, 49
               

               
Conread position:
               
64-408
               

               
Cow position:
               
chr17:29157249-29157587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
178, 43
               

               
Conread position:
               
64-442
               

               
Cow position:
               
chr17:9697870-9697472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
199, 7
               

               
Conread position:
               
64-475
               

               
Cow position:
               
chr17:20022686-20022273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
64-475
               

               
Cow position:
               
chr17:22032863-22032447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
223, 141
               

               
Conread position:
               
65-346
               

               
Cow position:
               
chr17:21918042-21917766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
102, 52
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr17:25181317-25181032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 101
               

               
Conread position:
               
65-361
               

               
Cow position:
               
chr17:11171627-11171914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
129, 73
               

               
Conread position:
               
65-407
               

               
Cow position:
               
chr17:8544138-8544475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
99, 41
               

               
Conread position:
               
65-460
               

               
Cow position:
               
chr17:24773515-24773902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 23
               

               
Conread position:
               
65-475
               

               
Cow position:
               
chr17:33933905-33933507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 43
               

               
Conread position:
               
65-483
               

               
Cow position:
               
chr17:24883736-24883321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
222, 42
               

               
Conread position:
               
65-492
               

               
Cow position:
               
chr17:17179868-17180301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
65-495
               

               
Cow position:
               
chr17:21243955-21243545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
201, 104
               

               
Conread position:
               
65-500
               

               
Cow position:
               
chr17:27795480-27795922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
65-518
               

               
Cow position:
               
chr17:20848362-20848813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
188, 49
               

               
Conread position:
               
66-193
               

               
Cow position:
               
chr17:21039108-21039235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
66-283
               

               
Cow position:
               
chr17:27305991-27306201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
66-406
               

               
Cow position:
               
chr17:8079147-8079481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
222, 48
               

               
Conread position:
               
66-473
               

               
Cow position:
               
chr17:12306563-12306161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
182, 92
               

               
Conread position:
               
66-492
               

               
Cow position:
               
chr17:3467602-3468008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
221, 42
               

               
Conread position:
               
67-310
               

               
Cow position:
               
chr17:10510828-10510586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
198, 143
               

               
Conread position:
               
67-486
               

               
Cow position:
               
chr17:16371085-16371514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
94, 137
               

               
Conread position:
               
67-499
               

               
Cow position:
               
chr17:32027628-32027183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
100, 141
               

               
Conread position:
               
68-409
               

               
Cow position:
               
chr17:979318-978997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
68-466
               

               
Cow position:
               
chr17:5000741-5000369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
216, 52
               

               
Conread position:
               
68-492
               

               
Cow position:
               
chr17:36454931-36454522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
215, 43
               

               
Conread position:
               
68-507
               

               
Cow position:
               
chr17:34650278-34650737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
70-474
               

               
Cow position:
               
chr17:7142701-7143097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
71-476
               

               
Cow position:
               
chr17:1562936-1562549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
215, 66
               

               
Conread position:
               
71-483
               

               
Cow position:
               
chr17:4121884-4121478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 47
               

               
Conread position:
               
72-474
               

               
Cow position:
               
chr17:25916731-25917126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 133
               

               
Conread position:
               
73-257
               

               
Cow position:
               
chr17:44147136-44146954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 133
               

               
Conread position:
               
74-500
               

               
Cow position:
               
chr17:28467977-28468394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
167, 50
               

               
Conread position:
               
75-366
               

               
Cow position:
               
chr17:14762277-14761994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
88, 41
               

               
Conread position:
               
75-470
               

               
Cow position:
               
chr17:31037538-31037141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 43
               

               
Conread position:
               
76-463
               

               
Cow position:
               
chr17:5514598-5514986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
77-362
               

               
Cow position:
               
chr17:4967954-4968235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
177, 119
               

               
Conread position:
               
79-492
               

               
Cow position:
               
chr17:9966187-9965763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
33, 127
               

               
Conread position:
               
80-488
               

               
Cow position:
               
chr17:30713193-30713600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 28
               

               
Conread position:
               
82-497
               

               
Cow position:
               
chr17:18146031-18146454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
83-491
               

               
Cow position:
               
chr17:21599835-21599424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
85-475
               

               
Cow position:
               
chr17:14003669-14004065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 48
               

               
Conread position:
               
85-491
               

               
Cow position:
               
chr17:25117742-25118143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
86-462
               

               
Cow position:
               
chr17:6328961-6329340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
75, 121
               

               
Conread position:
               
89-575
               

               
Cow position:
               
chr17:18720601-18720114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
92-474
               

               
Cow position:
               
chr17:30728377-30728747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
92-499
               

               
Cow position:
               
chr17:24928338-24928744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
99-482
               

               
Cow position:
               
chr17:26233964-26233580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
182, 73
               

               
Conread position:
               
99-489
               

               
Cow position:
               
chr17:32280531-32280924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
209, 38
               

               
Conread position:
               
99-496
               

               
Cow position:
               
chr17:11962687-11962271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 256
               

               
Conread position:
               
102-485
               

               
Cow position:
               
chr17:40673251-40673623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 105
               

               
Conread position:
               
104-499
               

               
Cow position:
               
chr17:6318990-6318602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
110-475
               

               
Cow position:
               
chr17:4300045-4299701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
174, 18
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr17:39736056-39736337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
175, 54
               

               
Conread position:
               
112-498
               

               
Cow position:
               
chr17:32138539-32138153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 29
               

               
Conread position:
               
113-390
               

               
Cow position:
               
chr17:33658190-33657917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
116-493
               

               
Cow position:
               
chr17:20884402-20884783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
163, 90
               

               
Conread position:
               
118-499
               

               
Cow position:
               
chr17:32348955-32349332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
118, 43
               

               
Conread position:
               
119-470
               

               
Cow position:
               
chr17:31856545-31856908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 148
               

               
Conread position:
               
120-470
               

               
Cow position:
               
chr17:1040629-1040964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
166, 90
               

               
Conread position:
               
122-382
               

               
Cow position:
               
chr17:25501995-25502254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
119, 82
               

               
Conread position:
               
122-475
               

               
Cow position:
               
chr17:24004268-24004614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
164, 47
               

               
Conread position:
               
123-346
               

               
Cow position:
               
chr17:35339029-35338814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
163, 82
               

               
Conread position:
               
129-455
               

               
Cow position:
               
chr17:40851875-40852189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
158, 88
               

               
Conread position:
               
134-490
               

               
Cow position:
               
chr17:21325230-21325598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
134-491
               

               
Cow position:
               
chr17:25616156-25616502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
152, 66
               

               
Conread position:
               
136-497
               

               
Cow position:
               
chr17:14652881-14652519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 69
               

               
Conread position:
               
140-407
               

               
Cow position:
               
chr17:15340849-15340584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
140-474
               

               
Cow position:
               
chr17:25514220-25513878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
140-520
               

               
Cow position:
               
chr17:11912594-11912215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
141-492
               

               
Cow position:
               
chr17:36864535-36864886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 69
               

               
Conread position:
               
142-411
               

               
Cow position:
               
chr17:23517037-23516769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
150-490
               

               
Cow position:
               
chr17:25342827-25342484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
151-383
               

               
Cow position:
               
chr17:21758224-21757996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
136, 59
               

               
Conread position:
               
158-484
               

               
Cow position:
               
chr17:9824590-9824919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
159-491
               

               
Cow position:
               
chr17:25126276-25126598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
171-475
               

               
Cow position:
               
chr17:40638880-40639188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
177-491
               

               
Cow position:
               
chr17:34791126-34790809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
178-466
               

               
Cow position:
               
chr17:5372588-5372300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
180-470
               

               
Cow position:
               
chr17:12511029-12510749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
185-474
               

               
Cow position:
               
chr17:39606378-39606662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
185-477
               

               
Cow position:
               
chr17:22051644-22051348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
192-497
               

               
Cow position:
               
chr17:33155200-33154895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
194-513
               

               
Cow position:
               
chr17:21039515-21039833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
195-407
               

               
Cow position:
               
chr17:22017135-22016919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
209-483
               

               
Cow position:
               
chr17:29961621-29961902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 164
               

               
Conread position:
               
209-486
               

               
Cow position:
               
chr17:32333125-32332837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
209-489
               

               
Cow position:
               
chr17:25800915-25800629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
210-484
               

               
Cow position:
               
chr17:40412554-40412829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
213-489
               

               
Cow position:
               
chr17:17044362-17044078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 159
               

               
Conread position:
               
214-475
               

               
Cow position:
               
chr17:25511214-25511483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
215-498
               

               
Cow position:
               
chr17:29995465-29995171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 267
               

               
Conread position:
               
216-490
               

               
Cow position:
               
chr17:8815164-8815444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
219-456
               

               
Cow position:
               
chr17:26575254-26575000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
219-485
               

               
Cow position:
               
chr17:12959082-12959349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
220-501
               

               
Cow position:
               
chr17:12325785-12325503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
67, 37
               

               
Conread position:
               
221-459
               

               
Cow position:
               
chr17:45296394-45296631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
222-474
               

               
Cow position:
               
chr17:25473300-25473041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
225-466
               

               
Cow position:
               
chr17:24163020-24163266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
230-475
               

               
Cow position:
               
chr17:37341053-37340790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
237-491
               

               
Cow position:
               
chr17:21466269-21466003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 249
               

               
Conread position:
               
254-492
               

               
Cow position:
               
chr17:17034962-17035203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
265-486
               

               
Cow position:
               
chr17:42150414-42150641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
280-491
               

               
Cow position:
               
chr17:44234289-44234500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 121
               

               
Conread position:
               
288-486
               

               
Cow position:
               
chr17:26225074-26225281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
291-478
               

               
Cow position:
               
chr17:21676940-21677135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
294-470
               

               
Cow position:
               
chr17:7711492-7711672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
295-538
               

               
Cow position:
               
chr17:21718941-21718692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
298-484
               

               
Cow position:
               
chr17:20905040-20904858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
298-490
               

               
Cow position:
               
chr17:39963936-39964135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
305-490
               

               
Cow position:
               
chr17:19544167-19543977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
5, 56
               

               
Conread position:
               
305-492
               

               
Cow position:
               
chr17:20881743-20881558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
305-526
               

               
Cow position:
               
chr17:6761782-6761562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
306-500
               

               
Cow position:
               
chr17:34860445-34860640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
309-504
               

               
Cow position:
               
chr17:6787006-6787209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 172
               

               
Conread position:
               
334-488
               

               
Cow position:
               
chr17:8809410-8809256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
337-489
               

               
Cow position:
               
chr17:20783096-20782944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 141
               
Show alignments to all cow chromosomes.