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Cow genome map

           
Conread name:
           
Ss1.1-Pig1-46K21.5
        

               
Conread position:
               
10-455
               

               
Cow position:
               
chr27:6500283-6499834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
200, 18
               

               
Conread position:
               
11-456
               

               
Cow position:
               
chr27:26239241-26238799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
275, 16
               

               
Conread position:
               
13-303
               

               
Cow position:
               
chr27:27449219-27449499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
14-347
               

               
Cow position:
               
chr27:30362457-30362143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
270, 14
               

               
Conread position:
               
14-382
               

               
Cow position:
               
chr27:23483437-23483080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
239, 14
               

               
Conread position:
               
20-465
               

               
Cow position:
               
chr27:26427920-26428362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
24-277
               

               
Cow position:
               
chr27:29251085-29250842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
154, 11
               

               
Conread position:
               
25-478
               

               
Cow position:
               
chr27:22220758-22220303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 10
               

               
Conread position:
               
25-482
               

               
Cow position:
               
chr27:28190013-28190442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
338, 18
               

               
Conread position:
               
25-483
               

               
Cow position:
               
chr27:6541829-6541384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
153, 10
               

               
Conread position:
               
25-483
               

               
Cow position:
               
chr27:13638788-13639238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
148, 10
               

               
Conread position:
               
25-491
               

               
Cow position:
               
chr27:27019896-27020354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
28-242
               

               
Cow position:
               
chr27:16620192-16619979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
182, 7
               

               
Conread position:
               
28-407
               

               
Cow position:
               
chr27:19718121-19717742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
200, 7
               

               
Conread position:
               
34-456
               

               
Cow position:
               
chr27:18739587-18739149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 74
               

               
Conread position:
               
34-473
               

               
Cow position:
               
chr27:18558560-18558116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
127, 116
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr27:27388831-27389270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
35-364
               

               
Cow position:
               
chr27:4835412-4835734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
35-383
               

               
Cow position:
               
chr27:20641151-20641481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
35-395
               

               
Cow position:
               
chr27:25411324-25411669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-452
               

               
Cow position:
               
chr27:20067783-20068196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
228, 59
               

               
Conread position:
               
35-474
               

               
Cow position:
               
chr27:22171493-22171059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 19
               

               
Conread position:
               
35-474
               

               
Cow position:
               
chr27:23452675-23452220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
114, 237
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr27:2957603-2957173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 174
               

               
Conread position:
               
35-477
               

               
Cow position:
               
chr27:10980059-10979613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
132, 147
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr27:17473008-17472551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
174, 86
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr27:30915197-30914744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
254, 79
               

               
Conread position:
               
35-499
               

               
Cow position:
               
chr27:20354775-20354329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-500
               

               
Cow position:
               
chr27:13875927-13875462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
206, 28
               

               
Conread position:
               
35-517
               

               
Cow position:
               
chr27:15867586-15867107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
132, 54
               

               
Conread position:
               
36-533
               

               
Cow position:
               
chr27:26433620-26434121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
231, 23
               

               
Conread position:
               
37-495
               

               
Cow position:
               
chr27:30406838-30407310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
38-355
               

               
Cow position:
               
chr27:23472448-23472140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
248, 160
               

               
Conread position:
               
39-205
               

               
Cow position:
               
chr27:21452878-21453049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
39-253
               

               
Cow position:
               
chr27:30177383-30177590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
39-300
               

               
Cow position:
               
chr27:6523237-6522982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
39-361
               

               
Cow position:
               
chr27:4812685-4813008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
210, 170
               

               
Conread position:
               
39-361
               

               
Cow position:
               
chr27:27843801-27844127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
197, 134
               

               
Conread position:
               
39-383
               

               
Cow position:
               
chr27:1498506-1498167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
39-383
               

               
Cow position:
               
chr27:4385875-4386209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
39-471
               

               
Cow position:
               
chr27:27632418-27632833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 92
               

               
Conread position:
               
39-477
               

               
Cow position:
               
chr27:3306967-3306540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
39-482
               

               
Cow position:
               
chr27:16513690-16514100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
134, 72
               

               
Conread position:
               
39-491
               

               
Cow position:
               
chr27:15866415-15865967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
39-499
               

               
Cow position:
               
chr27:24445967-24446407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
41-360
               

               
Cow position:
               
chr27:18593462-18593149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 162
               

               
Conread position:
               
42-203
               

               
Cow position:
               
chr27:6674431-6674266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 148
               

               
Conread position:
               
43-475
               

               
Cow position:
               
chr27:26426398-26425979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
13, 164
               

               
Conread position:
               
44-532
               

               
Cow position:
               
chr27:8353663-8353195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
45-208
               

               
Cow position:
               
chr27:30989657-30989819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
45-217
               

               
Cow position:
               
chr27:18434286-18434459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
45-346
               

               
Cow position:
               
chr27:30988984-30988688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
45-483
               

               
Cow position:
               
chr27:18030870-18031321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
50-258
               

               
Cow position:
               
chr27:22268685-22268481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
203, 160
               

               
Conread position:
               
51-485
               

               
Cow position:
               
chr27:28496196-28496624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
51-492
               

               
Cow position:
               
chr27:30868558-30869013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
61-347
               

               
Cow position:
               
chr27:24999565-24999851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
180, 115
               

               
Conread position:
               
61-492
               

               
Cow position:
               
chr27:11435159-11435586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
62-407
               

               
Cow position:
               
chr27:15643344-15643002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
99, 146
               

               
Conread position:
               
63-196
               

               
Cow position:
               
chr27:26322521-26322388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-201
               

               
Cow position:
               
chr27:23558218-23558355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
63-247
               

               
Cow position:
               
chr27:1183709-1183885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
63-247
               

               
Cow position:
               
chr27:28038170-28038349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
63-254
               

               
Cow position:
               
chr27:23454974-23455171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 152
               

               
Conread position:
               
63-257
               

               
Cow position:
               
chr27:9090634-9090823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
187, 80
               

               
Conread position:
               
63-257
               

               
Cow position:
               
chr27:27055745-27055556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
63-258
               

               
Cow position:
               
chr27:28164244-28164423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
63-261
               

               
Cow position:
               
chr27:13198084-13197899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
63-273
               

               
Cow position:
               
chr27:20592151-20591949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
63-279
               

               
Cow position:
               
chr27:27622846-27623056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 148
               

               
Conread position:
               
63-281
               

               
Cow position:
               
chr27:15858923-15859131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
189, 58
               

               
Conread position:
               
63-282
               

               
Cow position:
               
chr27:27040775-27040559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
63-283
               

               
Cow position:
               
chr27:14902481-14902697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 85
               

               
Conread position:
               
63-284
               

               
Cow position:
               
chr27:16871748-16871961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
187, 70
               

               
Conread position:
               
63-298
               

               
Cow position:
               
chr27:28061597-28061821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
197, 47
               

               
Conread position:
               
63-344
               

               
Cow position:
               
chr27:4829640-4829920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr27:25380158-25379878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
184, 53
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr27:27640824-27641121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
112, 210
               

               
Conread position:
               
63-347
               

               
Cow position:
               
chr27:12429576-12429296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
63-357
               

               
Cow position:
               
chr27:1058512-1058798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
173, 102
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr27:19546335-19546636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr27:27064272-27064564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
178, 105
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr27:30551163-30550865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
197, 50
               

               
Conread position:
               
63-365
               

               
Cow position:
               
chr27:4805741-4806031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
63-382
               

               
Cow position:
               
chr27:24014573-24014886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
187, 55
               

               
Conread position:
               
63-391
               

               
Cow position:
               
chr27:23882207-23882523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
63-395
               

               
Cow position:
               
chr27:26413088-26413415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
197, 66
               

               
Conread position:
               
63-404
               

               
Cow position:
               
chr27:4673188-4672842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 61
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr27:25277304-25276971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr27:30354176-30354516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
191, 48
               

               
Conread position:
               
63-424
               

               
Cow position:
               
chr27:22418597-22418957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 87
               

               
Conread position:
               
63-456
               

               
Cow position:
               
chr27:21393337-21393718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
63-460
               

               
Cow position:
               
chr27:13317787-13318206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 230
               

               
Conread position:
               
63-461
               

               
Cow position:
               
chr27:19685547-19685940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 50
               

               
Conread position:
               
63-471
               

               
Cow position:
               
chr27:299216-299614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
221, 106
               

               
Conread position:
               
63-472
               

               
Cow position:
               
chr27:21668957-21669353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 53
               

               
Conread position:
               
63-472
               

               
Cow position:
               
chr27:24331893-24331473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 67
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr27:16786994-16786587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 142
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr27:28206965-28206560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 125
               

               
Conread position:
               
63-477
               

               
Cow position:
               
chr27:29493749-29494144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
299, 55
               

               
Conread position:
               
63-478
               

               
Cow position:
               
chr27:26864951-26865355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
186, 44
               

               
Conread position:
               
63-480
               

               
Cow position:
               
chr27:27245184-27245611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
212, 8
               

               
Conread position:
               
63-483
               

               
Cow position:
               
chr27:6788126-6787699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr27:16284640-16284234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
189, 144
               

               
Conread position:
               
63-487
               

               
Cow position:
               
chr27:13841544-13841111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
183, 109
               

               
Conread position:
               
63-488
               

               
Cow position:
               
chr27:31230926-31231336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
238, 55
               

               
Conread position:
               
63-489
               

               
Cow position:
               
chr27:27856501-27856079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr27:17397279-17397711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 148
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr27:22035206-22035631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 140
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr27:28921729-28922156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
234, 69
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr27:13252177-13251769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
289, 147
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr27:23632769-23632350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
100, 129
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr27:26508990-26509420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
63-494
               

               
Cow position:
               
chr27:15408876-15409289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 45
               

               
Conread position:
               
63-498
               

               
Cow position:
               
chr27:31372812-31373241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
63-499
               

               
Cow position:
               
chr27:12516366-12515922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
63-499
               

               
Cow position:
               
chr27:26440889-26441298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
113, 146
               

               
Conread position:
               
63-512
               

               
Cow position:
               
chr27:29831519-29831990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
63-513
               

               
Cow position:
               
chr27:28931620-28932082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 428
               

               
Conread position:
               
63-521
               

               
Cow position:
               
chr27:19388186-19387731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 143
               

               
Conread position:
               
64-347
               

               
Cow position:
               
chr27:4054-3786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
184, 87
               

               
Conread position:
               
64-347
               

               
Cow position:
               
chr27:815531-815251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
64-367
               

               
Cow position:
               
chr27:24321356-24321058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
185, 144
               

               
Conread position:
               
64-395
               

               
Cow position:
               
chr27:27038677-27038998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
64-407
               

               
Cow position:
               
chr27:20795950-20795620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
185, 33
               

               
Conread position:
               
64-408
               

               
Cow position:
               
chr27:6074083-6073757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
130, 47
               

               
Conread position:
               
64-438
               

               
Cow position:
               
chr27:1768469-1768829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
166, 13
               

               
Conread position:
               
64-475
               

               
Cow position:
               
chr27:15668600-15669018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 146
               

               
Conread position:
               
64-485
               

               
Cow position:
               
chr27:28518452-28518042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
221, 49
               

               
Conread position:
               
64-486
               

               
Cow position:
               
chr27:10307129-10307558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
64-486
               

               
Cow position:
               
chr27:15454378-15453957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 74
               

               
Conread position:
               
64-486
               

               
Cow position:
               
chr27:18544164-18543733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
64-487
               

               
Cow position:
               
chr27:14670214-14670636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 151
               

               
Conread position:
               
64-492
               

               
Cow position:
               
chr27:30582904-30582475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
65-297
               

               
Cow position:
               
chr27:154533-154304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
184, 10
               

               
Conread position:
               
65-383
               

               
Cow position:
               
chr27:26151185-26150870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
183, 51
               

               
Conread position:
               
65-405
               

               
Cow position:
               
chr27:30792771-30793099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
207, 89
               

               
Conread position:
               
65-420
               

               
Cow position:
               
chr27:26959455-26959803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
221, 34
               

               
Conread position:
               
65-466
               

               
Cow position:
               
chr27:16705412-16705018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
184, 37
               

               
Conread position:
               
65-470
               

               
Cow position:
               
chr27:12596924-12596543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
219, 18
               

               
Conread position:
               
65-475
               

               
Cow position:
               
chr27:7412548-7412150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 104
               

               
Conread position:
               
65-491
               

               
Cow position:
               
chr27:7934998-7935413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
221, 57
               

               
Conread position:
               
65-497
               

               
Cow position:
               
chr27:6550616-6550193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
175, 53
               

               
Conread position:
               
65-504
               

               
Cow position:
               
chr27:8062191-8062623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
145, 88
               

               
Conread position:
               
66-407
               

               
Cow position:
               
chr27:7212548-7212884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
66-475
               

               
Cow position:
               
chr27:8629707-8630118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
221, 54
               

               
Conread position:
               
66-486
               

               
Cow position:
               
chr27:24477581-24477171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
170, 144
               

               
Conread position:
               
67-164
               

               
Cow position:
               
chr27:26406877-26406974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-474
               

               
Cow position:
               
chr27:22547241-22547631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 138
               

               
Conread position:
               
67-486
               

               
Cow position:
               
chr27:4944365-4944763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
143, 73
               

               
Conread position:
               
68-483
               

               
Cow position:
               
chr27:30871897-30872308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
93, 48
               

               
Conread position:
               
69-493
               

               
Cow position:
               
chr27:29799105-29798690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
201, 42
               

               
Conread position:
               
70-492
               

               
Cow position:
               
chr27:16781025-16780595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
181, 70
               

               
Conread position:
               
71-495
               

               
Cow position:
               
chr27:19668629-19669071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
90, 132
               

               
Conread position:
               
71-499
               

               
Cow position:
               
chr27:11480470-11480907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
108, 51
               

               
Conread position:
               
71-500
               

               
Cow position:
               
chr27:29431620-29431208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 115
               

               
Conread position:
               
72-412
               

               
Cow position:
               
chr27:22454623-22454952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
72-481
               

               
Cow position:
               
chr27:7346819-7346419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
72-496
               

               
Cow position:
               
chr27:19497033-19496609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
74-475
               

               
Cow position:
               
chr27:27460415-27460822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
212, 135
               

               
Conread position:
               
74-489
               

               
Cow position:
               
chr27:19896913-19896508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
223, 91
               

               
Conread position:
               
75-456
               

               
Cow position:
               
chr27:23891093-23890708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
76-300
               

               
Cow position:
               
chr27:20548322-20548552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
134, 36
               

               
Conread position:
               
76-456
               

               
Cow position:
               
chr27:22735447-22735819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
221, 50
               

               
Conread position:
               
76-483
               

               
Cow position:
               
chr27:22513520-22513932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
77-407
               

               
Cow position:
               
chr27:27136360-27136689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 129
               

               
Conread position:
               
78-385
               

               
Cow position:
               
chr27:29312518-29312824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
177, 5
               

               
Conread position:
               
80-459
               

               
Cow position:
               
chr27:26489751-26490133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
178, 129
               

               
Conread position:
               
81-489
               

               
Cow position:
               
chr27:30890440-30890043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 129
               

               
Conread position:
               
85-383
               

               
Cow position:
               
chr27:1123180-1122884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 115
               

               
Conread position:
               
91-341
               

               
Cow position:
               
chr27:20789240-20789484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
158, 21
               

               
Conread position:
               
91-395
               

               
Cow position:
               
chr27:17331642-17331342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
163, 114
               

               
Conread position:
               
91-456
               

               
Cow position:
               
chr27:435375-435007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
92-503
               

               
Cow position:
               
chr27:427111-426695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 119
               

               
Conread position:
               
93-491
               

               
Cow position:
               
chr27:16103941-16103548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
175, 23
               

               
Conread position:
               
95-346
               

               
Cow position:
               
chr27:20919028-20918781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
160, 77
               

               
Conread position:
               
95-407
               

               
Cow position:
               
chr27:16589577-16589875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
194, 34
               

               
Conread position:
               
95-500
               

               
Cow position:
               
chr27:19500097-19500506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
104-406
               

               
Cow position:
               
chr27:31148892-31148592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
105-486
               

               
Cow position:
               
chr27:8168300-8168673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr27:22569896-22569673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
178, 14
               

               
Conread position:
               
108-394
               

               
Cow position:
               
chr27:20549582-20549870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
140, 93
               

               
Conread position:
               
108-478
               

               
Cow position:
               
chr27:26999293-26999671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
110-500
               

               
Cow position:
               
chr27:1353714-1353309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
112-558
               

               
Cow position:
               
chr27:15871285-15870822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
118-365
               

               
Cow position:
               
chr27:8405720-8405952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
169, 49
               

               
Conread position:
               
120-362
               

               
Cow position:
               
chr27:16626010-16625774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
140, 5
               

               
Conread position:
               
122-486
               

               
Cow position:
               
chr27:26226178-26226544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
123-474
               

               
Cow position:
               
chr27:11151787-11151427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
124-460
               

               
Cow position:
               
chr27:27694662-27695004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
126-342
               

               
Cow position:
               
chr27:30804448-30804237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
124, 84
               

               
Conread position:
               
128-490
               

               
Cow position:
               
chr27:23594422-23594063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
130-473
               

               
Cow position:
               
chr27:22386974-22386646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
161, 76
               

               
Conread position:
               
139-486
               

               
Cow position:
               
chr27:23511085-23510719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
140-489
               

               
Cow position:
               
chr27:20092744-20093069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chr27:26407108-26407330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
195-481
               

               
Cow position:
               
chr27:15865656-15865361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 286
               

               
Conread position:
               
201-482
               

               
Cow position:
               
chr27:12425327-12425037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
209-489
               

               
Cow position:
               
chr27:23560000-23560288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
45, 183
               

               
Conread position:
               
209-490
               

               
Cow position:
               
chr27:20517689-20517393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
211-460
               

               
Cow position:
               
chr27:23107873-23108131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
40, 94
               

               
Conread position:
               
228-483
               

               
Cow position:
               
chr27:28478593-28478333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 180
               

               
Conread position:
               
228-489
               

               
Cow position:
               
chr27:31210559-31210292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
228-492
               

               
Cow position:
               
chr27:11982637-11982907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
238-485
               

               
Cow position:
               
chr27:29615055-29614789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
247-500
               

               
Cow position:
               
chr27:31169117-31169373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
254-492
               

               
Cow position:
               
chr27:18435148-18435392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
261-481
               

               
Cow position:
               
chr27:15003000-15003229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
261-489
               

               
Cow position:
               
chr27:27055264-27055038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
261-492
               

               
Cow position:
               
chr27:15315495-15315263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 182
               

               
Conread position:
               
267-487
               

               
Cow position:
               
chr27:24223926-24223699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
271-480
               

               
Cow position:
               
chr27:6319887-6319674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
271-484
               

               
Cow position:
               
chr27:7343460-7343682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
272-475
               

               
Cow position:
               
chr27:23957483-23957274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
272-495
               

               
Cow position:
               
chr27:6162443-6162667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
279-485
               

               
Cow position:
               
chr27:19576363-19576577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
288-490
               

               
Cow position:
               
chr27:13204409-13204206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
288-521
               

               
Cow position:
               
chr27:19741458-19741684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
290-499
               

               
Cow position:
               
chr27:10404168-10404385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
290-510
               

               
Cow position:
               
chr27:11134034-11133812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
291-497
               

               
Cow position:
               
chr27:4398544-4398751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 124
               

               
Conread position:
               
295-471
               

               
Cow position:
               
chr27:1067509-1067336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
298-482
               

               
Cow position:
               
chr27:20048572-20048386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chr27:27606364-27606536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 139
               

               
Conread position:
               
305-485
               

               
Cow position:
               
chr27:3518436-3518249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 180
               

               
Conread position:
               
309-492
               

               
Cow position:
               
chr27:10598916-10598726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               
Show alignments to all cow chromosomes.