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Cow genome map

           
Conread name:
           
Ss1.1-Pig1-46K21.5
        

               
Conread position:
               
10-214
               

               
Cow position:
               
chr3:48370846-48371049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
200, 18
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr3:79292549-79292917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
274, 18
               

               
Conread position:
               
14-306
               

               
Cow position:
               
chr3:84000330-84000614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
14-489
               

               
Cow position:
               
chr3:31309637-31309164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
151, 21
               

               
Conread position:
               
14-491
               

               
Cow position:
               
chr3:15229100-15228649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
147, 14
               

               
Conread position:
               
14-494
               

               
Cow position:
               
chr3:23471749-23471268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
146, 14
               

               
Conread position:
               
20-346
               

               
Cow position:
               
chr3:53112893-53113217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
222, 8
               

               
Conread position:
               
20-347
               

               
Cow position:
               
chr3:26920622-26920951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
20-361
               

               
Cow position:
               
chr3:45534574-45534239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
234, 8
               

               
Conread position:
               
20-470
               

               
Cow position:
               
chr3:53150052-53150504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 8
               

               
Conread position:
               
20-492
               

               
Cow position:
               
chr3:53270551-53271029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
147, 8
               

               
Conread position:
               
22-531
               

               
Cow position:
               
chr3:52652350-52651841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
25-208
               

               
Cow position:
               
chr3:4332092-4332275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
136, 10
               

               
Conread position:
               
25-208
               

               
Cow position:
               
chr3:83920927-83921110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
25-357
               

               
Cow position:
               
chr3:4457347-4457018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
225, 9
               

               
Conread position:
               
25-470
               

               
Cow position:
               
chr3:74533077-74533505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 10
               

               
Conread position:
               
25-482
               

               
Cow position:
               
chr3:3985059-3985500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
338, 10
               

               
Conread position:
               
25-483
               

               
Cow position:
               
chr3:39970143-39969680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 13
               

               
Conread position:
               
25-485
               

               
Cow position:
               
chr3:13899724-13899269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
25-486
               

               
Cow position:
               
chr3:15158770-15159219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
25-502
               

               
Cow position:
               
chr3:66885309-66884825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
26-408
               

               
Cow position:
               
chr3:70566008-70565631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
28-346
               

               
Cow position:
               
chr3:53592968-53592647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
136, 7
               

               
Conread position:
               
28-347
               

               
Cow position:
               
chr3:10347086-10347394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
28-403
               

               
Cow position:
               
chr3:4031700-4032062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
260, 7
               

               
Conread position:
               
28-475
               

               
Cow position:
               
chr3:31419433-31419871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
143, 7
               

               
Conread position:
               
28-483
               

               
Cow position:
               
chr3:53384551-53384096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
144, 7
               

               
Conread position:
               
28-483
               

               
Cow position:
               
chr3:60933147-60933600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
211, 7
               

               
Conread position:
               
33-483
               

               
Cow position:
               
chr3:80740312-80740736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
202, 18
               

               
Conread position:
               
34-455
               

               
Cow position:
               
chr3:55117235-55116821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 174
               

               
Conread position:
               
34-475
               

               
Cow position:
               
chr3:8393083-8393515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
127, 171
               

               
Conread position:
               
34-497
               

               
Cow position:
               
chr3:14601977-14601515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chr3:18854831-18855002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
132, 68
               

               
Conread position:
               
35-208
               

               
Cow position:
               
chr3:27285963-27286139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
35-253
               

               
Cow position:
               
chr3:22872314-22872100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
127, 78
               

               
Conread position:
               
35-279
               

               
Cow position:
               
chr3:13118083-13118314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
225, 132
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chr3:9843322-9843563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
35-293
               

               
Cow position:
               
chr3:77496555-77496816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
210, 172
               

               
Conread position:
               
35-327
               

               
Cow position:
               
chr3:5851189-5850906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 8
               

               
Conread position:
               
35-328
               

               
Cow position:
               
chr3:81277966-81277674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 174
               

               
Conread position:
               
35-342
               

               
Cow position:
               
chr3:33698459-33698769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr3:71430474-71430161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
124, 171
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr3:78946101-78945799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
35-355
               

               
Cow position:
               
chr3:27289675-27289991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
218, 86
               

               
Conread position:
               
35-360
               

               
Cow position:
               
chr3:5096941-5097263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
35-363
               

               
Cow position:
               
chr3:66610100-66609785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
201, 68
               

               
Conread position:
               
35-365
               

               
Cow position:
               
chr3:59798992-59799310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
232, 76
               

               
Conread position:
               
35-382
               

               
Cow position:
               
chr3:58969158-58968824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr3:72675825-72676172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-407
               

               
Cow position:
               
chr3:70899638-70899995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
251, 86
               

               
Conread position:
               
35-407
               

               
Cow position:
               
chr3:80581409-80581758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
35-407
               

               
Cow position:
               
chr3:81371394-81371754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-408
               

               
Cow position:
               
chr3:73443349-73442990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
35-411
               

               
Cow position:
               
chr3:67704278-67704655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-417
               

               
Cow position:
               
chr3:73460717-73461083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
217, 19
               

               
Conread position:
               
35-455
               

               
Cow position:
               
chr3:68627937-68627531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
216, 76
               

               
Conread position:
               
35-460
               

               
Cow position:
               
chr3:66901004-66900566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 83
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr3:6873507-6873100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr3:70895784-70896210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
246, 167
               

               
Conread position:
               
35-474
               

               
Cow position:
               
chr3:17937101-17936672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 156
               

               
Conread position:
               
35-474
               

               
Cow position:
               
chr3:48362821-48363244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 38
               

               
Conread position:
               
35-474
               

               
Cow position:
               
chr3:73394854-73395290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
127, 176
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr3:2393228-2392793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
125, 96
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr3:56582581-56583024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 76
               

               
Conread position:
               
35-479
               

               
Cow position:
               
chr3:2506743-2506295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
35-482
               

               
Cow position:
               
chr3:25690523-25690982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
132, 175
               

               
Conread position:
               
35-483
               

               
Cow position:
               
chr3:2397045-2396610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 170
               

               
Conread position:
               
35-484
               

               
Cow position:
               
chr3:2674767-2675217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
35-484
               

               
Cow position:
               
chr3:18066872-18067315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
266, 75
               

               
Conread position:
               
35-484
               

               
Cow position:
               
chr3:32584896-32585338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
251, 86
               

               
Conread position:
               
35-485
               

               
Cow position:
               
chr3:30463428-30462990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
192, 83
               

               
Conread position:
               
35-486
               

               
Cow position:
               
chr3:26065739-26066176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 98
               

               
Conread position:
               
35-488
               

               
Cow position:
               
chr3:4461751-4461304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-489
               

               
Cow position:
               
chr3:18393646-18393210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
219, 74
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr3:16547414-16547862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
330, 80
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr3:61539534-61539990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
132, 177
               

               
Conread position:
               
35-500
               

               
Cow position:
               
chr3:65236763-65237222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
143, 58
               

               
Conread position:
               
35-503
               

               
Cow position:
               
chr3:15954339-15953880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
221, 97
               

               
Conread position:
               
36-163
               

               
Cow position:
               
chr3:52147941-52147814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-335
               

               
Cow position:
               
chr3:29807201-29807494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
217, 99
               

               
Conread position:
               
36-482
               

               
Cow position:
               
chr3:51234357-51233919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
36-483
               

               
Cow position:
               
chr3:48241360-48241789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
212, 69
               

               
Conread position:
               
36-486
               

               
Cow position:
               
chr3:57763962-57764400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
37-347
               

               
Cow position:
               
chr3:65800332-65800628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
37-483
               

               
Cow position:
               
chr3:74088433-74087994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
320, 6
               

               
Conread position:
               
38-346
               

               
Cow position:
               
chr3:2216100-2216410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
122, 177
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr3:55970966-55971134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr3:34392355-34392183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr3:58383710-58383880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr3:61467347-61467521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
171, 155
               

               
Conread position:
               
39-346
               

               
Cow position:
               
chr3:36672262-36671953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 147
               

               
Conread position:
               
39-407
               

               
Cow position:
               
chr3:22716538-22716191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
312, 71
               

               
Conread position:
               
39-425
               

               
Cow position:
               
chr3:26682052-26681689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
320, 94
               

               
Conread position:
               
39-474
               

               
Cow position:
               
chr3:68303072-68303493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
39-475
               

               
Cow position:
               
chr3:17957208-17957637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
170, 72
               

               
Conread position:
               
39-477
               

               
Cow position:
               
chr3:82020102-82019665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
113, 136
               

               
Conread position:
               
39-478
               

               
Cow position:
               
chr3:52607924-52608357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 179
               

               
Conread position:
               
39-483
               

               
Cow position:
               
chr3:73467360-73467811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
39-484
               

               
Cow position:
               
chr3:78076930-78077375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
39-490
               

               
Cow position:
               
chr3:53739448-53738992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
217, 166
               

               
Conread position:
               
39-491
               

               
Cow position:
               
chr3:65058443-65058892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
39-498
               

               
Cow position:
               
chr3:7338032-7337584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 142
               

               
Conread position:
               
39-499
               

               
Cow position:
               
chr3:79902245-79902695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
170, 79
               

               
Conread position:
               
39-500
               

               
Cow position:
               
chr3:71497403-71496927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
121, 99
               

               
Conread position:
               
39-525
               

               
Cow position:
               
chr3:45647418-45647892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
40-475
               

               
Cow position:
               
chr3:3556287-3556724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
42-473
               

               
Cow position:
               
chr3:49327682-49328108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 167
               

               
Conread position:
               
42-483
               

               
Cow position:
               
chr3:49482966-49482531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
42-489
               

               
Cow position:
               
chr3:16752509-16752064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
42-489
               

               
Cow position:
               
chr3:23105624-23105175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
43-207
               

               
Cow position:
               
chr3:14717555-14717716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 8
               

               
Conread position:
               
44-214
               

               
Cow position:
               
chr3:26894406-26894575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
44-490
               

               
Cow position:
               
chr3:59610978-59610528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
45-347
               

               
Cow position:
               
chr3:46350406-46350714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
17, 153
               

               
Conread position:
               
45-451
               

               
Cow position:
               
chr3:18184816-18185229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
164, 81
               

               
Conread position:
               
56-201
               

               
Cow position:
               
chr3:29334754-29334611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
115, 8
               

               
Conread position:
               
60-502
               

               
Cow position:
               
chr3:26970588-26971014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
237, 48
               

               
Conread position:
               
61-258
               

               
Cow position:
               
chr3:79950469-79950277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
100, 150
               

               
Conread position:
               
61-396
               

               
Cow position:
               
chr3:66292415-66292083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
61-475
               

               
Cow position:
               
chr3:57754720-57754299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
148, 111
               

               
Conread position:
               
61-481
               

               
Cow position:
               
chr3:45881673-45882082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
226, 57
               

               
Conread position:
               
61-492
               

               
Cow position:
               
chr3:79220614-79221044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
146, 55
               

               
Conread position:
               
63-205
               

               
Cow position:
               
chr3:78201033-78201175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-208
               

               
Cow position:
               
chr3:4861455-4861594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
63-208
               

               
Cow position:
               
chr3:42588115-42588264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 68
               

               
Conread position:
               
63-208
               

               
Cow position:
               
chr3:51609582-51609728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
63-211
               

               
Cow position:
               
chr3:18607135-18607282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr3:11019884-11020035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr3:83201762-83201610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
63-241
               

               
Cow position:
               
chr3:79208237-79208063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 138
               

               
Conread position:
               
63-245
               

               
Cow position:
               
chr3:31501113-31501289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
63-249
               

               
Cow position:
               
chr3:34316198-34316015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 117
               

               
Conread position:
               
63-257
               

               
Cow position:
               
chr3:25691515-25691705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 76
               

               
Conread position:
               
63-283
               

               
Cow position:
               
chr3:35283332-35283113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
181, 147
               

               
Conread position:
               
63-296
               

               
Cow position:
               
chr3:19789353-19789124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
63-300
               

               
Cow position:
               
chr3:74409257-74409479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
63-313
               

               
Cow position:
               
chr3:17451168-17450932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
197, 106
               

               
Conread position:
               
63-345
               

               
Cow position:
               
chr3:6689760-6690041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 145
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr3:31047183-31046910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
168, 15
               

               
Conread position:
               
63-355
               

               
Cow position:
               
chr3:11711719-11712016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
64, 12
               

               
Conread position:
               
63-360
               

               
Cow position:
               
chr3:8457421-8457710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
147, 88
               

               
Conread position:
               
63-360
               

               
Cow position:
               
chr3:36100594-36100893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
208, 97
               

               
Conread position:
               
63-360
               

               
Cow position:
               
chr3:55992105-55991812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
187, 83
               

               
Conread position:
               
63-360
               

               
Cow position:
               
chr3:74611328-74611619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr3:23445124-23444831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 51
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr3:34937606-34937901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
186, 55
               

               
Conread position:
               
63-365
               

               
Cow position:
               
chr3:19006433-19006719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
244, 60
               

               
Conread position:
               
63-383
               

               
Cow position:
               
chr3:62826857-62826539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
221, 140
               

               
Conread position:
               
63-394
               

               
Cow position:
               
chr3:83816027-83815697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 91
               

               
Conread position:
               
63-395
               

               
Cow position:
               
chr3:26219296-26218960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 125
               

               
Conread position:
               
63-397
               

               
Cow position:
               
chr3:59208580-59208889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
223, 48
               

               
Conread position:
               
63-399
               

               
Cow position:
               
chr3:55272277-55271948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
186, 60
               

               
Conread position:
               
63-403
               

               
Cow position:
               
chr3:57624233-57624565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
63-405
               

               
Cow position:
               
chr3:56059573-56059914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr3:2680277-2680618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr3:17447842-17447510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
201, 54
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr3:48296475-48296803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
300, 58
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr3:80071882-80072232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
46, 148
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr3:12712157-12711809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr3:13507229-13507576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
63-412
               

               
Cow position:
               
chr3:3738250-3738591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 117
               

               
Conread position:
               
63-412
               

               
Cow position:
               
chr3:55836063-55835712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 147
               

               
Conread position:
               
63-428
               

               
Cow position:
               
chr3:73708815-73709176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
205, 12
               

               
Conread position:
               
63-450
               

               
Cow position:
               
chr3:72390846-72391238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
63-454
               

               
Cow position:
               
chr3:69417022-69416623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
63-455
               

               
Cow position:
               
chr3:61857262-61857665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 150
               

               
Conread position:
               
63-456
               

               
Cow position:
               
chr3:49461171-49460769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
179, 108
               

               
Conread position:
               
63-456
               

               
Cow position:
               
chr3:70334935-70334535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
109, 8
               

               
Conread position:
               
63-456
               

               
Cow position:
               
chr3:74600883-74601269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
63-468
               

               
Cow position:
               
chr3:17222378-17221964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 26
               

               
Conread position:
               
63-469
               

               
Cow position:
               
chr3:16333572-16333974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
63-473
               

               
Cow position:
               
chr3:74233961-74234355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 32
               

               
Conread position:
               
63-474
               

               
Cow position:
               
chr3:44932274-44932687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 142
               

               
Conread position:
               
63-474
               

               
Cow position:
               
chr3:69750934-69750560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
63-474
               

               
Cow position:
               
chr3:72777006-72777408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr3:5374099-5374485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
224, 70
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr3:8060898-8061296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
184, 40
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr3:13353123-13353540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 142
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr3:17695239-17694826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
179, 69
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr3:18686682-18687077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
184, 40
               

               
Conread position:
               
63-476
               

               
Cow position:
               
chr3:9641330-9641732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 43
               

               
Conread position:
               
63-477
               

               
Cow position:
               
chr3:11987096-11987505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
63-479
               

               
Cow position:
               
chr3:56476448-56476853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
171, 61
               

               
Conread position:
               
63-479
               

               
Cow position:
               
chr3:71161560-71161974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 60
               

               
Conread position:
               
63-482
               

               
Cow position:
               
chr3:55947341-55947781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
104, 145
               

               
Conread position:
               
63-482
               

               
Cow position:
               
chr3:68156496-68156910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
63-483
               

               
Cow position:
               
chr3:5045044-5044627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
104, 150
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr3:10958463-10958058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 48
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr3:17456503-17456080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 118
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr3:83474513-83474942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
187, 49
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr3:7331351-7330950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 146
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr3:15387977-15388407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
98, 147
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr3:49119265-49118844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 141
               

               
Conread position:
               
63-487
               

               
Cow position:
               
chr3:53221780-53222200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 48
               

               
Conread position:
               
63-487
               

               
Cow position:
               
chr3:73764430-73764027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
104, 48
               

               
Conread position:
               
63-488
               

               
Cow position:
               
chr3:20256966-20257407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 203
               

               
Conread position:
               
63-488
               

               
Cow position:
               
chr3:77188208-77188632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr3:54945890-54946313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 142
               

               
Conread position:
               
63-491
               

               
Cow position:
               
chr3:3032161-3032600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
63-495
               

               
Cow position:
               
chr3:29887658-29887244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 36
               

               
Conread position:
               
63-496
               

               
Cow position:
               
chr3:64172211-64172620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
221, 18
               

               
Conread position:
               
63-497
               

               
Cow position:
               
chr3:12705793-12705349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
63-497
               

               
Cow position:
               
chr3:31298394-31297959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
104, 150
               

               
Conread position:
               
63-497
               

               
Cow position:
               
chr3:50768444-50768877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 142
               

               
Conread position:
               
63-497
               

               
Cow position:
               
chr3:61224969-61224550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
193, 44
               

               
Conread position:
               
63-498
               

               
Cow position:
               
chr3:80564726-80565164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
63-499
               

               
Cow position:
               
chr3:83490842-83491280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 160
               

               
Conread position:
               
63-500
               

               
Cow position:
               
chr3:79592123-79591699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
104, 145
               

               
Conread position:
               
63-506
               

               
Cow position:
               
chr3:55189985-55189544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
63-530
               

               
Cow position:
               
chr3:67744862-67744408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
63-531
               

               
Cow position:
               
chr3:174695-175177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 227
               

               
Conread position:
               
63-533
               

               
Cow position:
               
chr3:78443797-78443338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
98, 125
               

               
Conread position:
               
63-538
               

               
Cow position:
               
chr3:26903881-26904352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
104, 59
               

               
Conread position:
               
63-560
               

               
Cow position:
               
chr3:83455386-83454896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
64-206
               

               
Cow position:
               
chr3:79196611-79196475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
64-208
               

               
Cow position:
               
chr3:55106676-55106530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
64-282
               

               
Cow position:
               
chr3:48269630-48269840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
181, 105
               

               
Conread position:
               
64-327
               

               
Cow position:
               
chr3:21341197-21340938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
64-355
               

               
Cow position:
               
chr3:59206007-59206289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
123, 147
               

               
Conread position:
               
64-360
               

               
Cow position:
               
chr3:23092216-23091920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 147
               

               
Conread position:
               
64-361
               

               
Cow position:
               
chr3:33327471-33327766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr3:70401669-70401976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
220, 49
               

               
Conread position:
               
64-408
               

               
Cow position:
               
chr3:15752861-15752530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
185, 42
               

               
Conread position:
               
64-460
               

               
Cow position:
               
chr3:53046890-53046497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
64-463
               

               
Cow position:
               
chr3:59000979-59000599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
177, 44
               

               
Conread position:
               
64-470
               

               
Cow position:
               
chr3:75158132-75158526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
178, 44
               

               
Conread position:
               
64-487
               

               
Cow position:
               
chr3:14552645-14553060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 52
               

               
Conread position:
               
64-491
               

               
Cow position:
               
chr3:525121-525517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
186, 47
               

               
Conread position:
               
64-494
               

               
Cow position:
               
chr3:15057831-15057447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
64-502
               

               
Cow position:
               
chr3:63315898-63316332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 136
               

               
Conread position:
               
64-507
               

               
Cow position:
               
chr3:72168954-72168525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
65-214
               

               
Cow position:
               
chr3:35074449-35074597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
65-347
               

               
Cow position:
               
chr3:58540765-58540479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 121
               

               
Conread position:
               
65-421
               

               
Cow position:
               
chr3:21547334-21546982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
188, 107
               

               
Conread position:
               
65-489
               

               
Cow position:
               
chr3:29813011-29813418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 66
               

               
Conread position:
               
65-489
               

               
Cow position:
               
chr3:64281168-64280750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 140
               

               
Conread position:
               
65-490
               

               
Cow position:
               
chr3:23169302-23168876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 141
               

               
Conread position:
               
65-495
               

               
Cow position:
               
chr3:27274301-27274725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 53
               

               
Conread position:
               
65-543
               

               
Cow position:
               
chr3:71237925-71238392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
219, 10
               

               
Conread position:
               
66-319
               

               
Cow position:
               
chr3:49218549-49218299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
66-360
               

               
Cow position:
               
chr3:27532893-27532599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
119, 155
               

               
Conread position:
               
66-360
               

               
Cow position:
               
chr3:73759751-73759461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
166, 144
               

               
Conread position:
               
66-485
               

               
Cow position:
               
chr3:75479781-75480185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
198, 40
               

               
Conread position:
               
66-491
               

               
Cow position:
               
chr3:54903337-54903758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 147
               

               
Conread position:
               
67-483
               

               
Cow position:
               
chr3:210093-210505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
100, 42
               

               
Conread position:
               
67-522
               

               
Cow position:
               
chr3:53790771-53790319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 138
               

               
Conread position:
               
68-497
               

               
Cow position:
               
chr3:74754101-74754513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
177, 5
               

               
Conread position:
               
69-451
               

               
Cow position:
               
chr3:45279232-45279621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
71-408
               

               
Cow position:
               
chr3:15506221-15506555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
180, 139
               

               
Conread position:
               
71-483
               

               
Cow position:
               
chr3:67929494-67929076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
101, 137
               

               
Conread position:
               
71-489
               

               
Cow position:
               
chr3:43233277-43233692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
90, 135
               

               
Conread position:
               
71-492
               

               
Cow position:
               
chr3:2518763-2518345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 133
               

               
Conread position:
               
71-492
               

               
Cow position:
               
chr3:32310665-32310221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
71-500
               

               
Cow position:
               
chr3:68146062-68145653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
71-505
               

               
Cow position:
               
chr3:38863891-38864323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 47
               

               
Conread position:
               
72-346
               

               
Cow position:
               
chr3:56301573-56301316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
203, 138
               

               
Conread position:
               
72-405
               

               
Cow position:
               
chr3:74134480-74134807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
162, 39
               

               
Conread position:
               
72-499
               

               
Cow position:
               
chr3:72473682-72474121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 139
               

               
Conread position:
               
73-454
               

               
Cow position:
               
chr3:29891641-29891251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
73-475
               

               
Cow position:
               
chr3:55970280-55970691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 58
               

               
Conread position:
               
74-497
               

               
Cow position:
               
chr3:78092733-78092313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 106
               

               
Conread position:
               
75-485
               

               
Cow position:
               
chr3:68708230-68707836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 130
               

               
Conread position:
               
75-485
               

               
Cow position:
               
chr3:68881338-68880945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 130
               

               
Conread position:
               
76-480
               

               
Cow position:
               
chr3:11063157-11063544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 128
               

               
Conread position:
               
76-490
               

               
Cow position:
               
chr3:36375768-36375342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
177, 9
               

               
Conread position:
               
81-247
               

               
Cow position:
               
chr3:15859887-15859728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
81-346
               

               
Cow position:
               
chr3:25944861-25945135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
81-485
               

               
Cow position:
               
chr3:46006247-46005829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
80, 175
               

               
Conread position:
               
81-492
               

               
Cow position:
               
chr3:45211079-45211496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
164, 39
               

               
Conread position:
               
81-531
               

               
Cow position:
               
chr3:4319494-4319947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 93
               

               
Conread position:
               
82-207
               

               
Cow position:
               
chr3:5082857-5082732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
82-477
               

               
Cow position:
               
chr3:70609407-70609803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 118
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr3:74878804-74878538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
83-522
               

               
Cow position:
               
chr3:83845690-83846119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
85-474
               

               
Cow position:
               
chr3:6182415-6182058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
201, 17
               

               
Conread position:
               
85-474
               

               
Cow position:
               
chr3:60264931-60264547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
91-346
               

               
Cow position:
               
chr3:83727457-83727209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
161, 69
               

               
Conread position:
               
92-493
               

               
Cow position:
               
chr3:75853540-75853142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
92-500
               

               
Cow position:
               
chr3:55712220-55712630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
73, 302
               

               
Conread position:
               
93-361
               

               
Cow position:
               
chr3:7940760-7940500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
175, 25
               

               
Conread position:
               
95-505
               

               
Cow position:
               
chr3:27697185-27696760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
96-437
               

               
Cow position:
               
chr3:14598745-14599067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
98-365
               

               
Cow position:
               
chr3:75711108-75711368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
188, 109
               

               
Conread position:
               
98-510
               

               
Cow position:
               
chr3:38828563-38828963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
99-475
               

               
Cow position:
               
chr3:53095138-53094748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
110, 73
               

               
Conread position:
               
101-504
               

               
Cow position:
               
chr3:67698079-67698482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
152, 78
               

               
Conread position:
               
103-331
               

               
Cow position:
               
chr3:77665974-77665743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
108-459
               

               
Cow position:
               
chr3:74079832-74079478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 97
               

               
Conread position:
               
108-475
               

               
Cow position:
               
chr3:57273873-57274235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
178, 72
               

               
Conread position:
               
108-483
               

               
Cow position:
               
chr3:55319096-55318715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
108-489
               

               
Cow position:
               
chr3:38035785-38035397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
108-492
               

               
Cow position:
               
chr3:53429088-53428722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
193, 11
               

               
Conread position:
               
110-475
               

               
Cow position:
               
chr3:76268173-76267797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
110-479
               

               
Cow position:
               
chr3:23408542-23408184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 30
               

               
Conread position:
               
110-484
               

               
Cow position:
               
chr3:54374052-54373672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 96
               

               
Conread position:
               
111-482
               

               
Cow position:
               
chr3:59596995-59597356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
160, 29
               

               
Conread position:
               
111-497
               

               
Cow position:
               
chr3:55434141-55434528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
115-475
               

               
Cow position:
               
chr3:71231212-71231574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
116-424
               

               
Cow position:
               
chr3:20678020-20677724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
170, 94
               

               
Conread position:
               
116-498
               

               
Cow position:
               
chr3:22232837-22232467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 94
               

               
Conread position:
               
117-279
               

               
Cow position:
               
chr3:34294469-34294310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 93
               

               
Conread position:
               
117-346
               

               
Cow position:
               
chr3:79092579-79092350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
93, 55
               

               
Conread position:
               
117-403
               

               
Cow position:
               
chr3:60265426-60265153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 94
               

               
Conread position:
               
117-478
               

               
Cow position:
               
chr3:54506525-54506885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
119-483
               

               
Cow position:
               
chr3:15052134-15051768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
122, 86
               

               
Conread position:
               
119-488
               

               
Cow position:
               
chr3:79094230-79093871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
132, 86
               

               
Conread position:
               
120-360
               

               
Cow position:
               
chr3:34669909-34669677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
122-474
               

               
Cow position:
               
chr3:70762302-70761948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 88
               

               
Conread position:
               
122-485
               

               
Cow position:
               
chr3:54782196-54781807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
88, 97
               

               
Conread position:
               
122-490
               

               
Cow position:
               
chr3:68586844-68587209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
127, 13
               

               
Conread position:
               
122-491
               

               
Cow position:
               
chr3:76922842-76922483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 83
               

               
Conread position:
               
126-407
               

               
Cow position:
               
chr3:26874415-26874694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
132-498
               

               
Cow position:
               
chr3:32787291-32787661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
135-347
               

               
Cow position:
               
chr3:55109781-55109570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
135-485
               

               
Cow position:
               
chr3:68616491-68616150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
136-503
               

               
Cow position:
               
chr3:48073039-48072685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
151, 47
               

               
Conread position:
               
142-499
               

               
Cow position:
               
chr3:59034874-59035246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
143-476
               

               
Cow position:
               
chr3:77581950-77582283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
144-486
               

               
Cow position:
               
chr3:24468536-24468196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
213, 66
               

               
Conread position:
               
144-489
               

               
Cow position:
               
chr3:19585704-19586055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 66
               

               
Conread position:
               
150-496
               

               
Cow position:
               
chr3:55177904-55177553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
152-482
               

               
Cow position:
               
chr3:79196610-79196946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
137, 58
               

               
Conread position:
               
155-473
               

               
Cow position:
               
chr3:3883965-3883646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
93, 51
               

               
Conread position:
               
157-483
               

               
Cow position:
               
chr3:78093528-78093209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
161-484
               

               
Cow position:
               
chr3:76155847-76156172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
144, 49
               

               
Conread position:
               
167-492
               

               
Cow position:
               
chr3:73237060-73237376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
180-484
               

               
Cow position:
               
chr3:22221198-22221511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
183-485
               

               
Cow position:
               
chr3:15951030-15950731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
104, 27
               

               
Conread position:
               
194-366
               

               
Cow position:
               
chr3:12670727-12670552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
195-475
               

               
Cow position:
               
chr3:15443842-15443550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
195-475
               

               
Cow position:
               
chr3:70334076-70333793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
206-470
               

               
Cow position:
               
chr3:14546901-14547170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
209-432
               

               
Cow position:
               
chr3:19626607-19626374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 148
               

               
Conread position:
               
209-463
               

               
Cow position:
               
chr3:9116930-9117198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 51
               

               
Conread position:
               
209-470
               

               
Cow position:
               
chr3:75608399-75608659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 188
               

               
Conread position:
               
209-475
               

               
Cow position:
               
chr3:31361320-31361599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
209-478
               

               
Cow position:
               
chr3:44961087-44960839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
209-492
               

               
Cow position:
               
chr3:22165515-22165222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
42, 116
               

               
Conread position:
               
210-382
               

               
Cow position:
               
chr3:3471941-3472119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
210-460
               

               
Cow position:
               
chr3:18607565-18607824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 195
               

               
Conread position:
               
212-527
               

               
Cow position:
               
chr3:49363020-49363332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
219-459
               

               
Cow position:
               
chr3:31350193-31349948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
219-474
               

               
Cow position:
               
chr3:71474496-71474232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
219-487
               

               
Cow position:
               
chr3:48459420-48459140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
219-502
               

               
Cow position:
               
chr3:69785714-69785417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
44, 206
               

               
Conread position:
               
220-497
               

               
Cow position:
               
chr3:58134774-58134487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 153
               

               
Conread position:
               
222-505
               

               
Cow position:
               
chr3:64196739-64197030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 264
               

               
Conread position:
               
225-469
               

               
Cow position:
               
chr3:10668961-10668709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 96
               

               
Conread position:
               
225-489
               

               
Cow position:
               
chr3:59299494-59299764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
228-489
               

               
Cow position:
               
chr3:76269818-76270078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
233-483
               

               
Cow position:
               
chr3:79272647-79272392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
248-522
               

               
Cow position:
               
chr3:51609243-51608965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 225
               

               
Conread position:
               
254-484
               

               
Cow position:
               
chr3:68004754-68004522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
267-501
               

               
Cow position:
               
chr3:22924415-22924181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
271-485
               

               
Cow position:
               
chr3:23132205-23131982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
288-533
               

               
Cow position:
               
chr3:67407384-67407132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 224
               

               
Conread position:
               
289-474
               

               
Cow position:
               
chr3:8523167-8522979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
292-488
               

               
Cow position:
               
chr3:55730481-55730279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 192
               

               
Conread position:
               
296-485
               

               
Cow position:
               
chr3:11281758-11281956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
298-486
               

               
Cow position:
               
chr3:15859385-15859196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
298-492
               

               
Cow position:
               
chr3:41863619-41863820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
304-475
               

               
Cow position:
               
chr3:52845556-52845731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
305-490
               

               
Cow position:
               
chr3:11027275-11027467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 180
               

               
Conread position:
               
305-490
               

               
Cow position:
               
chr3:75966780-75966592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
305-492
               

               
Cow position:
               
chr3:2016436-2016625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
305-498
               

               
Cow position:
               
chr3:27083042-27082843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 178
               

               
Conread position:
               
307-478
               

               
Cow position:
               
chr3:43896057-43895884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
307-486
               

               
Cow position:
               
chr3:26977537-26977725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
308-474
               

               
Cow position:
               
chr3:74050698-74050531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 102
               

               
Conread position:
               
310-491
               

               
Cow position:
               
chr3:19611346-19611159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
320-474
               

               
Cow position:
               
chr3:2636965-2637120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 117
               
Show alignments to all cow chromosomes.