Cow genome map

Conread name: Ss1.1-Pig1-46K21.5

Conread position: 1-256
Cow position: chr6:33276808-33277056 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 163, 15

Conread position: 10-257
Cow position: chr6:47540304-47540551 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 18

Conread position: 13-203
Cow position: chr6:20329800-20329991 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 23

Conread position: 14-408
Cow position: chr6:42961585-42961194 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 262
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 267, 14

Conread position: 14-489
Cow position: chr6:7190337-7189876 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 317
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 157, 19

Conread position: 14-491
Cow position: chr6:65870806-65871289 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 14

Conread position: 23-488
Cow position: chr6:29210291-29210731 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 312
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 12

Conread position: 25-359
Cow position: chr6:38218464-38218785 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 259, 10

Conread position: 25-408
Cow position: chr6:6343218-6343599 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 257
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 135, 10

Conread position: 25-456
Cow position: chr6:28482807-28483238 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 286
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 141, 10

Conread position: 25-474
Cow position: chr6:15242626-15243078 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 308
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 228, 10

Conread position: 25-483
Cow position: chr6:54430611-54431083 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 301
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 142, 10

Conread position: 26-352
Cow position: chr6:58073838-58074160 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 223, 9

Conread position: 27-475
Cow position: chr6:53025004-53024571 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 303
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 51, 6

Conread position: 28-361
Cow position: chr6:63197376-63197042 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 225
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 133, 7

Conread position: 28-485
Cow position: chr6:56849813-56850268 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 288
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 182, 7

Conread position: 28-497
Cow position: chr6:51581463-51580993 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 7

Conread position: 29-485
Cow position: chr6:15938056-15937601 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 313
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 87, 6

Conread position: 33-492
Cow position: chr6:2547039-2547521 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 39

Conread position: 34-472
Cow position: chr6:67950759-67951194 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 302
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 214, 81

Conread position: 35-163
Cow position: chr6:11829967-11830097 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 27, 16

Conread position: 35-203
Cow position: chr6:51463815-51463647 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 162, 145

Conread position: 35-204
Cow position: chr6:15266466-15266308 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 35-246
Cow position: chr6:2012820-2013022 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 89, 0

Conread position: 35-246
Cow position: chr6:61575405-61575612 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 108, 16

Conread position: 35-254
Cow position: chr6:39994660-39994450 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 134, 0

Conread position: 35-256
Cow position: chr6:58172986-58173195 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 35-300
Cow position: chr6:34031469-34031719 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 252, 68

Conread position: 35-347
Cow position: chr6:13040253-13040547 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 29, 154

Conread position: 35-360
Cow position: chr6:10695670-10695980 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 251, 16

Conread position: 35-361
Cow position: chr6:66131109-66131427 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 217
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 68

Conread position: 35-390
Cow position: chr6:1886862-1886516 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 29, 16

Conread position: 35-398
Cow position: chr6:38641299-38641649 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 244
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 213, 81

Conread position: 35-408
Cow position: chr6:21869844-21869479 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 251
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 28, 16

Conread position: 35-408
Cow position: chr6:67456504-67456888 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 251
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 180

Conread position: 35-425
Cow position: chr6:54867312-54867703 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 64, 38

Conread position: 35-445
Cow position: chr6:26915131-26915538 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 103, 71

Conread position: 35-462
Cow position: chr6:51835201-51835625 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 283
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 124, 87

Conread position: 35-466
Cow position: chr6:38853857-38853425 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 145

Conread position: 35-470
Cow position: chr6:36196015-36196437 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 35-473
Cow position: chr6:5609639-5609204 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 80

Conread position: 35-473
Cow position: chr6:54490939-54490508 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 282
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 144, 79

Conread position: 35-475
Cow position: chr6:1770394-1769954 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 290
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 256, 42

Conread position: 35-475
Cow position: chr6:10332295-10331858 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 286
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 174, 113

Conread position: 35-483
Cow position: chr6:60859505-60859051 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 300
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 29, 16

Conread position: 35-485
Cow position: chr6:44194744-44194305 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 75

Conread position: 35-491
Cow position: chr6:13688010-13687561 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 79

Conread position: 35-491
Cow position: chr6:21004456-21004939 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 312
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 204

Conread position: 35-491
Cow position: chr6:21231337-21231768 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 311
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 251, 84

Conread position: 35-491
Cow position: chr6:36202629-36203082 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 68

Conread position: 35-492
Cow position: chr6:32121712-32122152 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 8

Conread position: 35-498
Cow position: chr6:35181452-35180991 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 307
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 128, 74

Conread position: 35-500
Cow position: chr6:5095749-5095277 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 320
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 125, 79

Conread position: 35-500
Cow position: chr6:50746782-50747265 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 314
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 132, 44

Conread position: 35-520
Cow position: chr6:3952326-3952811 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 319
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 14

Conread position: 35-525
Cow position: chr6:64431740-64432225 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 321
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 16

Conread position: 35-529
Cow position: chr6:65702600-65702114 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 317
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 104, 60

Conread position: 35-536
Cow position: chr6:19401663-19402151 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 328
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 132, 73

Conread position: 36-217
Cow position: chr6:9322961-9323136 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 174, 52

Conread position: 36-470
Cow position: chr6:24031177-24031598 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 188

Conread position: 36-475
Cow position: chr6:2607415-2607848 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 290
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 28, 15

Conread position: 37-435
Cow position: chr6:6400751-6401146 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 6

Conread position: 37-452
Cow position: chr6:445115-445545 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 285
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 124, 6

Conread position: 37-498
Cow position: chr6:8562519-8562983 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 288
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 170, 224

Conread position: 38-248
Cow position: chr6:45690794-45690580 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 171

Conread position: 38-503
Cow position: chr6:21456886-21456407 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 95

Conread position: 39-246
Cow position: chr6:32210822-32210625 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 39-285
Cow position: chr6:53731326-53731566 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 12

Conread position: 39-394
Cow position: chr6:28977224-28976885 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 213, 77

Conread position: 39-455
Cow position: chr6:19695611-19696029 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 280
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 19, 12

Conread position: 39-459
Cow position: chr6:63720004-63720416 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 283
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 205, 63

Conread position: 39-484
Cow position: chr6:55282485-55282043 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 11

Conread position: 39-490
Cow position: chr6:26728722-26728290 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 308
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 95, 56

Conread position: 42-488
Cow position: chr6:37148999-37149435 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 302
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 6, 73

Conread position: 42-501
Cow position: chr6:53933039-53932580 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 302
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 122, 22

Conread position: 45-208
Cow position: chr6:12623278-12623440 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 14, 6

Conread position: 45-208
Cow position: chr6:60239581-60239418 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 69

Conread position: 45-218
Cow position: chr6:47988995-47989165 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 14, 71

Conread position: 45-354
Cow position: chr6:52248327-52248016 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 11, 167

Conread position: 45-358
Cow position: chr6:35613603-35613299 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 6

Conread position: 45-361
Cow position: chr6:57164237-57164550 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 6

Conread position: 46-346
Cow position: chr6:63272803-63272505 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 18, 142

Conread position: 46-483
Cow position: chr6:16746151-16746593 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 11, 34

Conread position: 53-511
Cow position: chr6:19755260-19754798 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 295
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 118

Conread position: 56-295
Cow position: chr6:60931075-60930845 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 14, 27

Conread position: 57-487
Cow position: chr6:15447386-15446941 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 294
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 8, 150

Conread position: 58-280
Cow position: chr6:54885089-54884875 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 103, 56

Conread position: 58-488
Cow position: chr6:47355648-47356078 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 295
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 178, 55

Conread position: 61-347
Cow position: chr6:25008541-25008826 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 195
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 148, 52

Conread position: 61-407
Cow position: chr6:54991175-54990832 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 54

Conread position: 61-447
Cow position: chr6:8637102-8637489 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 53

Conread position: 61-469
Cow position: chr6:34196321-34195928 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 268
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 225, 47

Conread position: 62-474
Cow position: chr6:46860340-46859932 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 121

Conread position: 63-163
Cow position: chr6:21311929-21311829 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 63-164
Cow position: chr6:12116225-12116124 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 89
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 58

Conread position: 63-204
Cow position: chr6:18904511-18904375 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 63-208
Cow position: chr6:20605762-20605906 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 63-208
Cow position: chr6:59015732-59015588 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 93, 50

Conread position: 63-217
Cow position: chr6:607091-607246 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 63-252
Cow position: chr6:15923170-15922990 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 61, 0

Conread position: 63-255
Cow position: chr6:10636005-10636187 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 146, 26

Conread position: 63-258
Cow position: chr6:7824590-7824778 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 146, 19

Conread position: 63-283
Cow position: chr6:10254068-10254281 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 98, 71

Conread position: 63-283
Cow position: chr6:48344157-48344373 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 205, 142

Conread position: 63-299
Cow position: chr6:6460368-6460599 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 224, 142

Conread position: 63-323
Cow position: chr6:49410860-49410614 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 224, 40

Conread position: 63-339
Cow position: chr6:67968785-67968511 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 186
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 179, 118

Conread position: 63-345
Cow position: chr6:20157153-20157438 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 94

Conread position: 63-345
Cow position: chr6:30973870-30974147 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 112

Conread position: 63-346
Cow position: chr6:60673375-60673671 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 83, 52

Conread position: 63-347
Cow position: chr6:9452944-9452663 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 183, 143

Conread position: 63-354
Cow position: chr6:56842988-56843268 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 182, 54

Conread position: 63-357
Cow position: chr6:1499467-1499760 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 191, 70

Conread position: 63-358
Cow position: chr6:12551096-12551387 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 190, 22

Conread position: 63-358
Cow position: chr6:28318238-28318515 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 224, 45

Conread position: 63-359
Cow position: chr6:25407563-25407271 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 55

Conread position: 63-361
Cow position: chr6:47799127-47799414 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 32

Conread position: 63-361
Cow position: chr6:55475075-55475376 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 53

Conread position: 63-361
Cow position: chr6:60057827-60057534 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 197
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 178, 53

Conread position: 63-363
Cow position: chr6:130336-130039 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 142

Conread position: 63-365
Cow position: chr6:23248134-23247840 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 181, 106

Conread position: 63-382
Cow position: chr6:20098135-20097816 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 48

Conread position: 63-383
Cow position: chr6:4864711-4864403 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 219
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 173, 42

Conread position: 63-383
Cow position: chr6:19681695-19681381 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 94, 22

Conread position: 63-383
Cow position: chr6:31525877-31526190 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 203, 87

Conread position: 63-383
Cow position: chr6:60350470-60350148 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 163, 146

Conread position: 63-398
Cow position: chr6:16423528-16423858 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 72

Conread position: 63-405
Cow position: chr6:14958520-14958173 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 231
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 177, 142

Conread position: 63-406
Cow position: chr6:67214570-67214917 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 229
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 104, 34

Conread position: 63-407
Cow position: chr6:8209760-8209437 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 237, 57

Conread position: 63-407
Cow position: chr6:59069799-59069451 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 236
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 193, 146

Conread position: 63-466
Cow position: chr6:39358512-39358112 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 281
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 130, 61

Conread position: 63-469
Cow position: chr6:29484919-29485317 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 54

Conread position: 63-469
Cow position: chr6:49398787-49398395 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 45

Conread position: 63-470
Cow position: chr6:38207667-38207250 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 143

Conread position: 63-475
Cow position: chr6:12668936-12669338 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 272
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 97, 46

Conread position: 63-475
Cow position: chr6:13367124-13367522 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 273
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 226, 26

Conread position: 63-475
Cow position: chr6:14949652-14949251 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 265
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 103, 62

Conread position: 63-475
Cow position: chr6:17090424-17090820 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 278
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 178, 147

Conread position: 63-475
Cow position: chr6:35990394-35989998 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 221, 45

Conread position: 63-475
Cow position: chr6:44078350-44078755 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 275
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 186, 52

Conread position: 63-475
Cow position: chr6:49421948-49421556 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 286
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 241, 20

Conread position: 63-476
Cow position: chr6:36652248-36652640 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 277
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 130, 53

Conread position: 63-477
Cow position: chr6:61113579-61114008 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 292
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 104, 224

Conread position: 63-478
Cow position: chr6:4383321-4383717 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 48

Conread position: 63-479
Cow position: chr6:10106167-10105739 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 386

Conread position: 63-483
Cow position: chr6:40032021-40032426 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 283
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 209, 26

Conread position: 63-485
Cow position: chr6:16700088-16700505 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 286
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 103, 46

Conread position: 63-486
Cow position: chr6:47519875-47520305 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 144

Conread position: 63-486
Cow position: chr6:67187520-67187934 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 273
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 181, 26

Conread position: 63-488
Cow position: chr6:23695826-23696250 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 303
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 181, 57

Conread position: 63-489
Cow position: chr6:47574734-47575145 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 55

Conread position: 63-489
Cow position: chr6:53460743-53460319 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 49

Conread position: 63-490
Cow position: chr6:18988045-18988447 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 271
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 221, 50

Conread position: 63-490
Cow position: chr6:50090470-50090900 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 283
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 99, 148

Conread position: 63-490
Cow position: chr6:50577349-50577771 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 147

Conread position: 63-492
Cow position: chr6:44566241-44566685 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 289
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 98, 125

Conread position: 63-492
Cow position: chr6:46557885-46558308 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 286
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 70, 48

Conread position: 63-492
Cow position: chr6:47305168-47305597 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 292
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 104, 50

Conread position: 63-492
Cow position: chr6:63252094-63251665 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 285
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 106, 53

Conread position: 63-496
Cow position: chr6:17414622-17414186 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 34

Conread position: 63-497
Cow position: chr6:52478598-52478150 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 151

Conread position: 63-500
Cow position: chr6:6060728-6060305 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 296
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 147, 61

Conread position: 63-505
Cow position: chr6:31535742-31535301 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 106

Conread position: 63-528
Cow position: chr6:12337813-12338289 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 312
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 98, 48

Conread position: 63-534
Cow position: chr6:10176474-10176005 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 314
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 98, 74

Conread position: 63-556
Cow position: chr6:1703643-1704116 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 312
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 221, 142

Conread position: 64-169
Cow position: chr6:26837559-26837454 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 64-201
Cow position: chr6:59301995-59301857 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 64-208
Cow position: chr6:33918021-33917881 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 64-251
Cow position: chr6:415924-416106 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 97, 147

Conread position: 64-257
Cow position: chr6:61137201-61137394 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 146, 97

Conread position: 64-345
Cow position: chr6:7989586-7989310 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 97, 149

Conread position: 64-360
Cow position: chr6:5114217-5113933 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 222, 52

Conread position: 64-361
Cow position: chr6:28811164-28810877 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 196
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 235, 24

Conread position: 64-379
Cow position: chr6:38614654-38614952 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 186, 47

Conread position: 64-383
Cow position: chr6:46570948-46571249 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 230, 46

Conread position: 64-391
Cow position: chr6:42565515-42565839 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 215
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 74

Conread position: 64-397
Cow position: chr6:53651871-53652199 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 233, 57

Conread position: 64-454
Cow position: chr6:52412684-52413081 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 109, 145

Conread position: 64-463
Cow position: chr6:7103406-7103011 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 268
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 97, 145

Conread position: 64-487
Cow position: chr6:46465658-46466069 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 59

Conread position: 64-489
Cow position: chr6:28084185-28083778 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 271
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 181, 104

Conread position: 64-491
Cow position: chr6:8125162-8125584 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 281
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 199, 50

Conread position: 64-525
Cow position: chr6:17997485-17997024 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 308
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 99, 52

Conread position: 65-223
Cow position: chr6:10605516-10605672 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 65-299
Cow position: chr6:22968908-22969140 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 185, 115

Conread position: 65-313
Cow position: chr6:18961692-18961442 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 33, 40

Conread position: 65-407
Cow position: chr6:35993408-35993750 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 238
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 96, 150

Conread position: 65-459
Cow position: chr6:15305413-15305795 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 43

Conread position: 65-460
Cow position: chr6:54132649-54133036 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 279
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 192, 38

Conread position: 65-475
Cow position: chr6:8965920-8966328 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 104

Conread position: 65-486
Cow position: chr6:323479-323052 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 279
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 135

Conread position: 65-521
Cow position: chr6:38771125-38771559 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 291
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 224, 53

Conread position: 65-561
Cow position: chr6:11246595-11247098 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 327
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 183, 38

Conread position: 66-160
Cow position: chr6:20929875-20929781 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 66-279
Cow position: chr6:58364180-58363972 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 176, 55

Conread position: 66-486
Cow position: chr6:32867374-32866970 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 292
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 236, 47

Conread position: 66-498
Cow position: chr6:48281827-48282256 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 297
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 51

Conread position: 67-302
Cow position: chr6:30315227-30314989 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 131, 141

Conread position: 67-317
Cow position: chr6:21542153-21542400 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 192, 55

Conread position: 67-332
Cow position: chr6:24961978-24962237 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 187, 113

Conread position: 67-360
Cow position: chr6:19427282-19427570 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 142, 94

Conread position: 68-503
Cow position: chr6:61631779-61631341 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 290
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 99, 136

Conread position: 69-259
Cow position: chr6:633526-633340 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 92, 135

Conread position: 69-294
Cow position: chr6:54492624-54492406 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 114

Conread position: 69-344
Cow position: chr6:12543098-12542827 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 173, 47

Conread position: 70-486
Cow position: chr6:26450153-26450552 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 266
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 214, 98

Conread position: 71-195
Cow position: chr6:5958186-5958063 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 71-283
Cow position: chr6:44984163-44984370 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 52

Conread position: 71-353
Cow position: chr6:24623140-24622861 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 193
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 183, 94

Conread position: 71-358
Cow position: chr6:47640600-47640314 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 140

Conread position: 71-361
Cow position: chr6:899453-899172 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 216, 51

Conread position: 71-486
Cow position: chr6:15243088-15243514 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 120

Conread position: 71-499
Cow position: chr6:17557211-17557639 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 269
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 142

Conread position: 71-500
Cow position: chr6:53178474-53178890 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 287
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 96, 50

Conread position: 71-500
Cow position: chr6:60783707-60784140 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 286
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 90, 44

Conread position: 72-485
Cow position: chr6:24934792-24934362 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 280
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 89, 132

Conread position: 72-488
Cow position: chr6:60850552-60850123 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 279
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 87, 132

Conread position: 74-474
Cow position: chr6:120079-120476 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 87

Conread position: 74-491
Cow position: chr6:27888188-27888600 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 280
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 87, 64

Conread position: 75-420
Cow position: chr6:48112045-48112381 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 250
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 185, 38

Conread position: 76-365
Cow position: chr6:58590116-58590399 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 190, 85

Conread position: 76-491
Cow position: chr6:19264658-19264245 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 42

Conread position: 78-369
Cow position: chr6:61608351-61608640 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 130

Conread position: 81-408
Cow position: chr6:37199692-37199368 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 80, 108

Conread position: 81-464
Cow position: chr6:60739862-60740239 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 259
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 80, 37

Conread position: 81-475
Cow position: chr6:57546369-57545989 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 267
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 129, 27

Conread position: 81-484
Cow position: chr6:7128553-7128155 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 288
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 118, 35

Conread position: 81-487
Cow position: chr6:50984071-50984474 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 79, 50

Conread position: 82-492
Cow position: chr6:34475706-34475301 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 264
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 50

Conread position: 82-593
Cow position: chr6:24468549-24468044 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 130

Conread position: 83-464
Cow position: chr6:48010676-48010295 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 248
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 78, 121

Conread position: 85-486
Cow position: chr6:9219124-9219516 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 254
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 272, 31

Conread position: 86-412
Cow position: chr6:46283146-46282829 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 124, 34

Conread position: 86-454
Cow position: chr6:54036283-54035921 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 245
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 211, 30

Conread position: 91-453
Cow position: chr6:57571330-57571697 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 97

Conread position: 91-492
Cow position: chr6:17313587-17313995 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 151, 114

Conread position: 97-369
Cow position: chr6:15022698-15022417 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 15

Conread position: 98-492
Cow position: chr6:60118010-60118398 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 252
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 22

Conread position: 99-483
Cow position: chr6:21399892-21399507 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 265
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 68, 114

Conread position: 101-491
Cow position: chr6:38640094-38640486 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 106

Conread position: 102-474
Cow position: chr6:21234908-21235286 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 249
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 134, 107

Conread position: 107-492
Cow position: chr6:61168644-61169009 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 253
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 180, 83

Conread position: 108-484
Cow position: chr6:53841629-53841255 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 247
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 176, 72

Conread position: 108-486
Cow position: chr6:58370613-58370998 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 252
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 108

Conread position: 112-327
Cow position: chr6:37376643-37376427 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 138, 88

Conread position: 116-361
Cow position: chr6:66874229-66874472 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 133, 34

Conread position: 116-383
Cow position: chr6:50975936-50976192 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 128, 73

Conread position: 116-497
Cow position: chr6:35725973-35726350 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 249
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 53, 95

Conread position: 118-454
Cow position: chr6:35842530-35842879 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 110

Conread position: 118-474
Cow position: chr6:32287518-32287870 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 157, 87

Conread position: 121-485
Cow position: chr6:11192583-11192229 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 133, 45

Conread position: 122-391
Cow position: chr6:58597620-58597353 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 120, 83

Conread position: 126-441
Cow position: chr6:61524310-61523998 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 122, 12

Conread position: 128-492
Cow position: chr6:59603317-59602959 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 41

Conread position: 142-381
Cow position: chr6:66375426-66375191 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 144, 68

Conread position: 142-490
Cow position: chr6:68376417-68376057 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 249
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 108, 19

Conread position: 147-470
Cow position: chr6:61269219-61269552 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 100, 58

Conread position: 150-358
Cow position: chr6:37332019-37332228 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 57

Conread position: 159-484
Cow position: chr6:694226-693895 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 127, 50

Conread position: 161-470
Cow position: chr6:22985935-22985627 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 209
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 49

Conread position: 162-492
Cow position: chr6:18955141-18954834 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 225, 47

Conread position: 177-474
Cow position: chr6:17068710-17068416 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 206
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 79, 33

Conread position: 177-480
Cow position: chr6:18118113-18117804 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 76, 33

Conread position: 177-492
Cow position: chr6:37395469-37395144 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 72, 33

Conread position: 177-531
Cow position: chr6:5845233-5844871 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 234
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 24

Conread position: 187-490
Cow position: chr6:68685493-68685798 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 70

Conread position: 192-512
Cow position: chr6:3350973-3351303 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 29

Conread position: 194-392
Cow position: chr6:59770177-59770376 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 16, 129

Conread position: 194-460
Cow position: chr6:68816116-68816395 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 130

Conread position: 195-474
Cow position: chr6:143418-143139 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 14

Conread position: 197-415
Cow position: chr6:60516782-60517002 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 63, 12

Conread position: 205-493
Cow position: chr6:45690641-45690361 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 82, 26

Conread position: 209-489
Cow position: chr6:2078854-2078562 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 54, 0

Conread position: 210-383
Cow position: chr6:32853153-32853331 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 32

Conread position: 219-488
Cow position: chr6:48097626-48097348 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 68, 23

Conread position: 219-488
Cow position: chr6:67451397-67451118 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 191
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 232

Conread position: 219-492
Cow position: chr6:62056588-62056870 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 225-489
Cow position: chr6:53546017-53546283 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 37, 22

Conread position: 234-486
Cow position: chr6:63065816-63066089 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 193
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 245-490
Cow position: chr6:21470427-21470176 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 247-472
Cow position: chr6:61109790-61110019 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 20, 98

Conread position: 271-485
Cow position: chr6:60850728-60850949 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 271-497
Cow position: chr6:51933582-51933802 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 48

Conread position: 274-499
Cow position: chr6:23938091-23938315 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 13, 117

Conread position: 274-529
Cow position: chr6:16090934-16091190 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 13, 138

Conread position: 288-498
Cow position: chr6:41657313-41657528 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 298-475
Cow position: chr6:21535097-21535280 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 304-493
Cow position: chr6:58173413-58173599 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 47, 84

Conread position: 305-486
Cow position: chr6:37994273-37994456 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 106

Conread position: 305-498
Cow position: chr6:5330477-5330675 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 91

Conread position: 310-467
Cow position: chr6:63182358-63182517 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.