• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig1-46K21.5
        

               
Conread position:
               
1-256
               

               
Cow position:
               
chr6:33276808-33277056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
10-257
               

               
Cow position:
               
chr6:47540304-47540551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
13-203
               

               
Cow position:
               
chr6:20329800-20329991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
14-408
               

               
Cow position:
               
chr6:42961585-42961194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
267, 14
               

               
Conread position:
               
14-489
               

               
Cow position:
               
chr6:7190337-7189876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
157, 19
               

               
Conread position:
               
14-491
               

               
Cow position:
               
chr6:65870806-65871289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
23-488
               

               
Cow position:
               
chr6:29210291-29210731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
25-359
               

               
Cow position:
               
chr6:38218464-38218785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
259, 10
               

               
Conread position:
               
25-408
               

               
Cow position:
               
chr6:6343218-6343599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
25-456
               

               
Cow position:
               
chr6:28482807-28483238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
25-474
               

               
Cow position:
               
chr6:15242626-15243078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
228, 10
               

               
Conread position:
               
25-483
               

               
Cow position:
               
chr6:54430611-54431083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
26-352
               

               
Cow position:
               
chr6:58073838-58074160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
223, 9
               

               
Conread position:
               
27-475
               

               
Cow position:
               
chr6:53025004-53024571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
51, 6
               

               
Conread position:
               
28-361
               

               
Cow position:
               
chr6:63197376-63197042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
133, 7
               

               
Conread position:
               
28-485
               

               
Cow position:
               
chr6:56849813-56850268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
182, 7
               

               
Conread position:
               
28-497
               

               
Cow position:
               
chr6:51581463-51580993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
29-485
               

               
Cow position:
               
chr6:15938056-15937601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
87, 6
               

               
Conread position:
               
33-492
               

               
Cow position:
               
chr6:2547039-2547521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
34-472
               

               
Cow position:
               
chr6:67950759-67951194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
214, 81
               

               
Conread position:
               
35-163
               

               
Cow position:
               
chr6:11829967-11830097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
35-203
               

               
Cow position:
               
chr6:51463815-51463647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 145
               

               
Conread position:
               
35-204
               

               
Cow position:
               
chr6:15266466-15266308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr6:2012820-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr6:61575405-61575612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
35-254
               

               
Cow position:
               
chr6:39994660-39994450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
35-256
               

               
Cow position:
               
chr6:58172986-58173195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
35-300
               

               
Cow position:
               
chr6:34031469-34031719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
252, 68
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr6:13040253-13040547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 154
               

               
Conread position:
               
35-360
               

               
Cow position:
               
chr6:10695670-10695980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
251, 16
               

               
Conread position:
               
35-361
               

               
Cow position:
               
chr6:66131109-66131427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 68
               

               
Conread position:
               
35-390
               

               
Cow position:
               
chr6:1886862-1886516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-398
               

               
Cow position:
               
chr6:38641299-38641649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
213, 81
               

               
Conread position:
               
35-408
               

               
Cow position:
               
chr6:21869844-21869479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
35-408
               

               
Cow position:
               
chr6:67456504-67456888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 180
               

               
Conread position:
               
35-425
               

               
Cow position:
               
chr6:54867312-54867703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
64, 38
               

               
Conread position:
               
35-445
               

               
Cow position:
               
chr6:26915131-26915538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
103, 71
               

               
Conread position:
               
35-462
               

               
Cow position:
               
chr6:51835201-51835625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
35-466
               

               
Cow position:
               
chr6:38853857-38853425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 145
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr6:36196015-36196437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
35-473
               

               
Cow position:
               
chr6:5609639-5609204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 80
               

               
Conread position:
               
35-473
               

               
Cow position:
               
chr6:54490939-54490508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 79
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr6:1770394-1769954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
256, 42
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr6:10332295-10331858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
174, 113
               

               
Conread position:
               
35-483
               

               
Cow position:
               
chr6:60859505-60859051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
35-485
               

               
Cow position:
               
chr6:44194744-44194305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 75
               

               
Conread position:
               
35-491
               

               
Cow position:
               
chr6:13688010-13687561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 79
               

               
Conread position:
               
35-491
               

               
Cow position:
               
chr6:21004456-21004939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 204
               

               
Conread position:
               
35-491
               

               
Cow position:
               
chr6:21231337-21231768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
251, 84
               

               
Conread position:
               
35-491
               

               
Cow position:
               
chr6:36202629-36203082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 68
               

               
Conread position:
               
35-492
               

               
Cow position:
               
chr6:32121712-32122152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 8
               

               
Conread position:
               
35-498
               

               
Cow position:
               
chr6:35181452-35180991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
35-500
               

               
Cow position:
               
chr6:5095749-5095277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
35-500
               

               
Cow position:
               
chr6:50746782-50747265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
35-520
               

               
Cow position:
               
chr6:3952326-3952811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
35-525
               

               
Cow position:
               
chr6:64431740-64432225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
35-529
               

               
Cow position:
               
chr6:65702600-65702114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
35-536
               

               
Cow position:
               
chr6:19401663-19402151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
132, 73
               

               
Conread position:
               
36-217
               

               
Cow position:
               
chr6:9322961-9323136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
174, 52
               

               
Conread position:
               
36-470
               

               
Cow position:
               
chr6:24031177-24031598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 188
               

               
Conread position:
               
36-475
               

               
Cow position:
               
chr6:2607415-2607848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
37-435
               

               
Cow position:
               
chr6:6400751-6401146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
37-452
               

               
Cow position:
               
chr6:445115-445545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
124, 6
               

               
Conread position:
               
37-498
               

               
Cow position:
               
chr6:8562519-8562983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
170, 224
               

               
Conread position:
               
38-248
               

               
Cow position:
               
chr6:45690794-45690580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
38-503
               

               
Cow position:
               
chr6:21456886-21456407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 95
               

               
Conread position:
               
39-246
               

               
Cow position:
               
chr6:32210822-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
39-285
               

               
Cow position:
               
chr6:53731326-53731566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
39-394
               

               
Cow position:
               
chr6:28977224-28976885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
213, 77
               

               
Conread position:
               
39-455
               

               
Cow position:
               
chr6:19695611-19696029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
39-459
               

               
Cow position:
               
chr6:63720004-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
205, 63
               

               
Conread position:
               
39-484
               

               
Cow position:
               
chr6:55282485-55282043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
39-490
               

               
Cow position:
               
chr6:26728722-26728290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
42-488
               

               
Cow position:
               
chr6:37148999-37149435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
6, 73
               

               
Conread position:
               
42-501
               

               
Cow position:
               
chr6:53933039-53932580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
45-208
               

               
Cow position:
               
chr6:12623278-12623440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
45-208
               

               
Cow position:
               
chr6:60239581-60239418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
114, 69
               

               
Conread position:
               
45-218
               

               
Cow position:
               
chr6:47988995-47989165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
45-354
               

               
Cow position:
               
chr6:52248327-52248016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
45-358
               

               
Cow position:
               
chr6:35613603-35613299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
45-361
               

               
Cow position:
               
chr6:57164237-57164550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
46-346
               

               
Cow position:
               
chr6:63272803-63272505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
18, 142
               

               
Conread position:
               
46-483
               

               
Cow position:
               
chr6:16746151-16746593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
53-511
               

               
Cow position:
               
chr6:19755260-19754798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
56-295
               

               
Cow position:
               
chr6:60931075-60930845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
57-487
               

               
Cow position:
               
chr6:15447386-15446941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
8, 150
               

               
Conread position:
               
58-280
               

               
Cow position:
               
chr6:54885089-54884875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 56
               

               
Conread position:
               
58-488
               

               
Cow position:
               
chr6:47355648-47356078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
178, 55
               

               
Conread position:
               
61-347
               

               
Cow position:
               
chr6:25008541-25008826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
148, 52
               

               
Conread position:
               
61-407
               

               
Cow position:
               
chr6:54991175-54990832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 54
               

               
Conread position:
               
61-447
               

               
Cow position:
               
chr6:8637102-8637489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 53
               

               
Conread position:
               
61-469
               

               
Cow position:
               
chr6:34196321-34195928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
225, 47
               

               
Conread position:
               
62-474
               

               
Cow position:
               
chr6:46860340-46859932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 121
               

               
Conread position:
               
63-163
               

               
Cow position:
               
chr6:21311929-21311829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-164
               

               
Cow position:
               
chr6:12116225-12116124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 58
               

               
Conread position:
               
63-204
               

               
Cow position:
               
chr6:18904511-18904375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
63-208
               

               
Cow position:
               
chr6:20605762-20605906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
63-208
               

               
Cow position:
               
chr6:59015732-59015588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 50
               

               
Conread position:
               
63-217
               

               
Cow position:
               
chr6:607091-607246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
63-252
               

               
Cow position:
               
chr6:15923170-15922990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
63-255
               

               
Cow position:
               
chr6:10636005-10636187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
146, 26
               

               
Conread position:
               
63-258
               

               
Cow position:
               
chr6:7824590-7824778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
63-283
               

               
Cow position:
               
chr6:10254068-10254281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
98, 71
               

               
Conread position:
               
63-283
               

               
Cow position:
               
chr6:48344157-48344373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
205, 142
               

               
Conread position:
               
63-299
               

               
Cow position:
               
chr6:6460368-6460599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
224, 142
               

               
Conread position:
               
63-323
               

               
Cow position:
               
chr6:49410860-49410614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
224, 40
               

               
Conread position:
               
63-339
               

               
Cow position:
               
chr6:67968785-67968511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
179, 118
               

               
Conread position:
               
63-345
               

               
Cow position:
               
chr6:20157153-20157438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
63-345
               

               
Cow position:
               
chr6:30973870-30974147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 112
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr6:60673375-60673671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
83, 52
               

               
Conread position:
               
63-347
               

               
Cow position:
               
chr6:9452944-9452663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
183, 143
               

               
Conread position:
               
63-354
               

               
Cow position:
               
chr6:56842988-56843268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
182, 54
               

               
Conread position:
               
63-357
               

               
Cow position:
               
chr6:1499467-1499760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
191, 70
               

               
Conread position:
               
63-358
               

               
Cow position:
               
chr6:12551096-12551387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
63-358
               

               
Cow position:
               
chr6:28318238-28318515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
224, 45
               

               
Conread position:
               
63-359
               

               
Cow position:
               
chr6:25407563-25407271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr6:47799127-47799414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr6:55475075-55475376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 53
               

               
Conread position:
               
63-361
               

               
Cow position:
               
chr6:60057827-60057534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
178, 53
               

               
Conread position:
               
63-363
               

               
Cow position:
               
chr6:130336-130039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 142
               

               
Conread position:
               
63-365
               

               
Cow position:
               
chr6:23248134-23247840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
181, 106
               

               
Conread position:
               
63-382
               

               
Cow position:
               
chr6:20098135-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 48
               

               
Conread position:
               
63-383
               

               
Cow position:
               
chr6:4864711-4864403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
173, 42
               

               
Conread position:
               
63-383
               

               
Cow position:
               
chr6:19681695-19681381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
63-383
               

               
Cow position:
               
chr6:31525877-31526190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
203, 87
               

               
Conread position:
               
63-383
               

               
Cow position:
               
chr6:60350470-60350148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
163, 146
               

               
Conread position:
               
63-398
               

               
Cow position:
               
chr6:16423528-16423858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 72
               

               
Conread position:
               
63-405
               

               
Cow position:
               
chr6:14958520-14958173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
177, 142
               

               
Conread position:
               
63-406
               

               
Cow position:
               
chr6:67214570-67214917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 34
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr6:8209760-8209437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
237, 57
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chr6:59069799-59069451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
193, 146
               

               
Conread position:
               
63-466
               

               
Cow position:
               
chr6:39358512-39358112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
63-469
               

               
Cow position:
               
chr6:29484919-29485317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 54
               

               
Conread position:
               
63-469
               

               
Cow position:
               
chr6:49398787-49398395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 45
               

               
Conread position:
               
63-470
               

               
Cow position:
               
chr6:38207667-38207250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 143
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr6:12668936-12669338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr6:13367124-13367522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
226, 26
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr6:14949652-14949251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 62
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr6:17090424-17090820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
178, 147
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr6:35990394-35989998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
221, 45
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr6:44078350-44078755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
186, 52
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr6:49421948-49421556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
241, 20
               

               
Conread position:
               
63-476
               

               
Cow position:
               
chr6:36652248-36652640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 53
               

               
Conread position:
               
63-477
               

               
Cow position:
               
chr6:61113579-61114008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
104, 224
               

               
Conread position:
               
63-478
               

               
Cow position:
               
chr6:4383321-4383717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 48
               

               
Conread position:
               
63-479
               

               
Cow position:
               
chr6:10106167-10105739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 386
               

               
Conread position:
               
63-483
               

               
Cow position:
               
chr6:40032021-40032426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
209, 26
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr6:16700088-16700505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr6:47519875-47520305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 144
               

               
Conread position:
               
63-486
               

               
Cow position:
               
chr6:67187520-67187934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
181, 26
               

               
Conread position:
               
63-488
               

               
Cow position:
               
chr6:23695826-23696250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
181, 57
               

               
Conread position:
               
63-489
               

               
Cow position:
               
chr6:47574734-47575145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 55
               

               
Conread position:
               
63-489
               

               
Cow position:
               
chr6:53460743-53460319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 49
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr6:18988045-18988447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
221, 50
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr6:50090470-50090900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 148
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr6:50577349-50577771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 147
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr6:44566241-44566685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
98, 125
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr6:46557885-46558308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr6:47305168-47305597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
63-492
               

               
Cow position:
               
chr6:63252094-63251665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
63-496
               

               
Cow position:
               
chr6:17414622-17414186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 34
               

               
Conread position:
               
63-497
               

               
Cow position:
               
chr6:52478598-52478150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 151
               

               
Conread position:
               
63-500
               

               
Cow position:
               
chr6:6060728-6060305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
147, 61
               

               
Conread position:
               
63-505
               

               
Cow position:
               
chr6:31535742-31535301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 106
               

               
Conread position:
               
63-528
               

               
Cow position:
               
chr6:12337813-12338289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
63-534
               

               
Cow position:
               
chr6:10176474-10176005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
98, 74
               

               
Conread position:
               
63-556
               

               
Cow position:
               
chr6:1703643-1704116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
221, 142
               

               
Conread position:
               
64-169
               

               
Cow position:
               
chr6:26837559-26837454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
64-201
               

               
Cow position:
               
chr6:59301995-59301857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
64-208
               

               
Cow position:
               
chr6:33918021-33917881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
64-251
               

               
Cow position:
               
chr6:415924-416106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
97, 147
               

               
Conread position:
               
64-257
               

               
Cow position:
               
chr6:61137201-61137394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
146, 97
               

               
Conread position:
               
64-345
               

               
Cow position:
               
chr6:7989586-7989310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
97, 149
               

               
Conread position:
               
64-360
               

               
Cow position:
               
chr6:5114217-5113933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
222, 52
               

               
Conread position:
               
64-361
               

               
Cow position:
               
chr6:28811164-28810877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
235, 24
               

               
Conread position:
               
64-379
               

               
Cow position:
               
chr6:38614654-38614952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
186, 47
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr6:46570948-46571249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
230, 46
               

               
Conread position:
               
64-391
               

               
Cow position:
               
chr6:42565515-42565839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
64-397
               

               
Cow position:
               
chr6:53651871-53652199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
233, 57
               

               
Conread position:
               
64-454
               

               
Cow position:
               
chr6:52412684-52413081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
109, 145
               

               
Conread position:
               
64-463
               

               
Cow position:
               
chr6:7103406-7103011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
97, 145
               

               
Conread position:
               
64-487
               

               
Cow position:
               
chr6:46465658-46466069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 59
               

               
Conread position:
               
64-489
               

               
Cow position:
               
chr6:28084185-28083778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
181, 104
               

               
Conread position:
               
64-491
               

               
Cow position:
               
chr6:8125162-8125584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
199, 50
               

               
Conread position:
               
64-525
               

               
Cow position:
               
chr6:17997485-17997024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
65-223
               

               
Cow position:
               
chr6:10605516-10605672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
65-299
               

               
Cow position:
               
chr6:22968908-22969140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
185, 115
               

               
Conread position:
               
65-313
               

               
Cow position:
               
chr6:18961692-18961442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
65-407
               

               
Cow position:
               
chr6:35993408-35993750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
96, 150
               

               
Conread position:
               
65-459
               

               
Cow position:
               
chr6:15305413-15305795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 43
               

               
Conread position:
               
65-460
               

               
Cow position:
               
chr6:54132649-54133036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
192, 38
               

               
Conread position:
               
65-475
               

               
Cow position:
               
chr6:8965920-8966328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 104
               

               
Conread position:
               
65-486
               

               
Cow position:
               
chr6:323479-323052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 135
               

               
Conread position:
               
65-521
               

               
Cow position:
               
chr6:38771125-38771559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
224, 53
               

               
Conread position:
               
65-561
               

               
Cow position:
               
chr6:11246595-11247098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
183, 38
               

               
Conread position:
               
66-160
               

               
Cow position:
               
chr6:20929875-20929781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
66-279
               

               
Cow position:
               
chr6:58364180-58363972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
176, 55
               

               
Conread position:
               
66-486
               

               
Cow position:
               
chr6:32867374-32866970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
236, 47
               

               
Conread position:
               
66-498
               

               
Cow position:
               
chr6:48281827-48282256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
67-302
               

               
Cow position:
               
chr6:30315227-30314989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
131, 141
               

               
Conread position:
               
67-317
               

               
Cow position:
               
chr6:21542153-21542400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
192, 55
               

               
Conread position:
               
67-332
               

               
Cow position:
               
chr6:24961978-24962237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
187, 113
               

               
Conread position:
               
67-360
               

               
Cow position:
               
chr6:19427282-19427570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
142, 94
               

               
Conread position:
               
68-503
               

               
Cow position:
               
chr6:61631779-61631341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
99, 136
               

               
Conread position:
               
69-259
               

               
Cow position:
               
chr6:633526-633340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 135
               

               
Conread position:
               
69-294
               

               
Cow position:
               
chr6:54492624-54492406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 114
               

               
Conread position:
               
69-344
               

               
Cow position:
               
chr6:12543098-12542827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
173, 47
               

               
Conread position:
               
70-486
               

               
Cow position:
               
chr6:26450153-26450552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
214, 98
               

               
Conread position:
               
71-195
               

               
Cow position:
               
chr6:5958186-5958063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
71-283
               

               
Cow position:
               
chr6:44984163-44984370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
71-353
               

               
Cow position:
               
chr6:24623140-24622861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
183, 94
               

               
Conread position:
               
71-358
               

               
Cow position:
               
chr6:47640600-47640314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 140
               

               
Conread position:
               
71-361
               

               
Cow position:
               
chr6:899453-899172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
216, 51
               

               
Conread position:
               
71-486
               

               
Cow position:
               
chr6:15243088-15243514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
71-499
               

               
Cow position:
               
chr6:17557211-17557639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
71-500
               

               
Cow position:
               
chr6:53178474-53178890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
96, 50
               

               
Conread position:
               
71-500
               

               
Cow position:
               
chr6:60783707-60784140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
72-485
               

               
Cow position:
               
chr6:24934792-24934362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
89, 132
               

               
Conread position:
               
72-488
               

               
Cow position:
               
chr6:60850552-60850123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 132
               

               
Conread position:
               
74-474
               

               
Cow position:
               
chr6:120079-120476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 87
               

               
Conread position:
               
74-491
               

               
Cow position:
               
chr6:27888188-27888600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
75-420
               

               
Cow position:
               
chr6:48112045-48112381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
185, 38
               

               
Conread position:
               
76-365
               

               
Cow position:
               
chr6:58590116-58590399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
190, 85
               

               
Conread position:
               
76-491
               

               
Cow position:
               
chr6:19264658-19264245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
78-369
               

               
Cow position:
               
chr6:61608351-61608640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 130
               

               
Conread position:
               
81-408
               

               
Cow position:
               
chr6:37199692-37199368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 108
               

               
Conread position:
               
81-464
               

               
Cow position:
               
chr6:60739862-60740239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
81-475
               

               
Cow position:
               
chr6:57546369-57545989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
81-484
               

               
Cow position:
               
chr6:7128553-7128155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
81-487
               

               
Cow position:
               
chr6:50984071-50984474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
82-492
               

               
Cow position:
               
chr6:34475706-34475301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
82-593
               

               
Cow position:
               
chr6:24468549-24468044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 130
               

               
Conread position:
               
83-464
               

               
Cow position:
               
chr6:48010676-48010295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
85-486
               

               
Cow position:
               
chr6:9219124-9219516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
272, 31
               

               
Conread position:
               
86-412
               

               
Cow position:
               
chr6:46283146-46282829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
86-454
               

               
Cow position:
               
chr6:54036283-54035921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
211, 30
               

               
Conread position:
               
91-453
               

               
Cow position:
               
chr6:57571330-57571697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 97
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr6:17313587-17313995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
151, 114
               

               
Conread position:
               
97-369
               

               
Cow position:
               
chr6:15022698-15022417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr6:60118010-60118398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
99-483
               

               
Cow position:
               
chr6:21399892-21399507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
68, 114
               

               
Conread position:
               
101-491
               

               
Cow position:
               
chr6:38640094-38640486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 106
               

               
Conread position:
               
102-474
               

               
Cow position:
               
chr6:21234908-21235286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
134, 107
               

               
Conread position:
               
107-492
               

               
Cow position:
               
chr6:61168644-61169009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
180, 83
               

               
Conread position:
               
108-484
               

               
Cow position:
               
chr6:53841629-53841255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
176, 72
               

               
Conread position:
               
108-486
               

               
Cow position:
               
chr6:58370613-58370998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
112-327
               

               
Cow position:
               
chr6:37376643-37376427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 88
               

               
Conread position:
               
116-361
               

               
Cow position:
               
chr6:66874229-66874472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
133, 34
               

               
Conread position:
               
116-383
               

               
Cow position:
               
chr6:50975936-50976192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
116-497
               

               
Cow position:
               
chr6:35725973-35726350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
118-454
               

               
Cow position:
               
chr6:35842530-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 110
               

               
Conread position:
               
118-474
               

               
Cow position:
               
chr6:32287518-32287870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
157, 87
               

               
Conread position:
               
121-485
               

               
Cow position:
               
chr6:11192583-11192229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
133, 45
               

               
Conread position:
               
122-391
               

               
Cow position:
               
chr6:58597620-58597353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
120, 83
               

               
Conread position:
               
126-441
               

               
Cow position:
               
chr6:61524310-61523998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
128-492
               

               
Cow position:
               
chr6:59603317-59602959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
142-381
               

               
Cow position:
               
chr6:66375426-66375191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 68
               

               
Conread position:
               
142-490
               

               
Cow position:
               
chr6:68376417-68376057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
147-470
               

               
Cow position:
               
chr6:61269219-61269552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
150-358
               

               
Cow position:
               
chr6:37332019-37332228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
159-484
               

               
Cow position:
               
chr6:694226-693895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
161-470
               

               
Cow position:
               
chr6:22985935-22985627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 49
               

               
Conread position:
               
162-492
               

               
Cow position:
               
chr6:18955141-18954834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
225, 47
               

               
Conread position:
               
177-474
               

               
Cow position:
               
chr6:17068710-17068416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
177-480
               

               
Cow position:
               
chr6:18118113-18117804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
177-492
               

               
Cow position:
               
chr6:37395469-37395144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
177-531
               

               
Cow position:
               
chr6:5845233-5844871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
187-490
               

               
Cow position:
               
chr6:68685493-68685798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
192-512
               

               
Cow position:
               
chr6:3350973-3351303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
194-392
               

               
Cow position:
               
chr6:59770177-59770376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
16, 129
               

               
Conread position:
               
194-460
               

               
Cow position:
               
chr6:68816116-68816395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
195-474
               

               
Cow position:
               
chr6:143418-143139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
197-415
               

               
Cow position:
               
chr6:60516782-60517002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
205-493
               

               
Cow position:
               
chr6:45690641-45690361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
209-489
               

               
Cow position:
               
chr6:2078854-2078562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
210-383
               

               
Cow position:
               
chr6:32853153-32853331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
219-488
               

               
Cow position:
               
chr6:48097626-48097348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
219-488
               

               
Cow position:
               
chr6:67451397-67451118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 232
               

               
Conread position:
               
219-492
               

               
Cow position:
               
chr6:62056588-62056870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
225-489
               

               
Cow position:
               
chr6:53546017-53546283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
234-486
               

               
Cow position:
               
chr6:63065816-63066089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
245-490
               

               
Cow position:
               
chr6:21470427-21470176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
247-472
               

               
Cow position:
               
chr6:61109790-61110019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
271-485
               

               
Cow position:
               
chr6:60850728-60850949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
271-497
               

               
Cow position:
               
chr6:51933582-51933802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
274-499
               

               
Cow position:
               
chr6:23938091-23938315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
274-529
               

               
Cow position:
               
chr6:16090934-16091190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
288-498
               

               
Cow position:
               
chr6:41657313-41657528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
298-475
               

               
Cow position:
               
chr6:21535097-21535280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
304-493
               

               
Cow position:
               
chr6:58173413-58173599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
305-486
               

               
Cow position:
               
chr6:37994273-37994456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
305-498
               

               
Cow position:
               
chr6:5330477-5330675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
310-467
               

               
Cow position:
               
chr6:63182358-63182517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               
Show alignments to all cow chromosomes.