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Cow genome map

           
Conread name:
           
Ss1.1-Pig1-74N02.5
        

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:61608435-61608639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr6:56843079-56843293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr6:47640509-47640292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr6:60350371-60350144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr6:58597580-58597355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr6:23466105-23465861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr6:61168699-61168925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr6:37332031-37332286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr6:20098040-20097764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:57571401-57571679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr6:2547170-2547465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr6:35842579-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr6:35990309-35990020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 230
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr6:143445-143155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 63
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr6:13687889-13687593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 187
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr6:32287562-32287854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
51, 165
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr6:15305505-15305795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr6:22985934-22985638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 233
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr6:32121835-32122119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr6:36202752-36203046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr6:46283076-46282767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr6:46860240-46859945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr6:51581329-51581030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 205
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:15300894-15300612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:17414524-17414222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:19264572-19264273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:29485014-29485311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:37149112-37149410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 274
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:38207567-38207258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 288
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:38771210-38771499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 145
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:39358421-39358115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:49398690-49398401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
51, 110
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:53024871-53024583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
83, 41
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:67950877-67951185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr6:53460648-53460342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 249
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:15243180-15243489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr6:60739940-60740241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
51, 245
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr6:4383410-4383707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:694223-693909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:50577448-50577751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:52478490-52478175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr6:15937927-15937614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr6:44194618-44194318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 51
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr6:18955141-18954848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:54991079-54990768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 230
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr6:21231455-21231756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
54, 62
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr6:120166-120488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 143
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:5609516-5609192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
88, 41
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:12669029-12669349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr6:9736720-9736395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
106, 48
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr6:19996543-19996867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr6:26915257-26915541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr6:63720122-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
48, 234
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr6:17068722-17068430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 226
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr6:54132744-54133036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 106
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr6:47519977-47520282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-304
               

               
Cow position:
               
chr6:46465750-46466061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr6:29248419-29248638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr6:46571045-46571276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr6:61524273-61523972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
5-314
               

               
Cow position:
               
chr6:23695922-23696245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 282
               

               
Conread position:
               
8-205
               

               
Cow position:
               
chr6:66375399-66375193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
8-225
               

               
Cow position:
               
chr6:6400882-6401112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
8-273
               

               
Cow position:
               
chr6:67643760-67643478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr6:8637206-8637489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
44, 223
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr6:57546289-57546001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
8-291
               

               
Cow position:
               
chr6:11192536-11192251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
44, 160
               

               
Conread position:
               
8-291
               

               
Cow position:
               
chr6:38853723-38853427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr6:55282356-55282051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
8-304
               

               
Cow position:
               
chr6:24031310-24031605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 34
               

               
Conread position:
               
8-313
               

               
Cow position:
               
chr6:16700196-16700504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 220
               

               
Conread position:
               
10-306
               

               
Cow position:
               
chr6:19695740-19696053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
10-313
               

               
Cow position:
               
chr6:24468458-24468149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
11-278
               

               
Cow position:
               
chr6:38641428-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
11-286
               

               
Cow position:
               
chr6:60516762-60517062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
11-287
               

               
Cow position:
               
chr6:5114111-5113822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
11-287
               

               
Cow position:
               
chr6:8966025-8966313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 112
               

               
Conread position:
               
11-287
               

               
Cow position:
               
chr6:19292733-19293023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr6:38640165-38640459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 275
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr6:9302782-9302478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr6:38609903-38610220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
11-325
               

               
Cow position:
               
chr6:32125998-32126322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
12-286
               

               
Cow position:
               
chr6:32867276-32866997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
12-292
               

               
Cow position:
               
chr6:18118117-18117821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
15-248
               

               
Cow position:
               
chr6:48112136-48112382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
15-266
               

               
Cow position:
               
chr6:61269248-61269515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
15-285
               

               
Cow position:
               
chr6:65870968-65871254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
37, 168
               

               
Conread position:
               
15-306
               

               
Cow position:
               
chr6:51835336-51835642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
15-313
               

               
Cow position:
               
chr6:22850306-22850001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
16-313
               

               
Cow position:
               
chr6:60468176-60468481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 270
               

               
Conread position:
               
17-291
               

               
Cow position:
               
chr6:59603271-59602986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
35, 208
               

               
Conread position:
               
22-215
               

               
Cow position:
               
chr6:28977093-28976890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
22-264
               

               
Cow position:
               
chr6:31078927-31078666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 192
               

               
Conread position:
               
22-287
               

               
Cow position:
               
chr6:31535626-31535348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
29, 198
               

               
Conread position:
               
22-290
               

               
Cow position:
               
chr6:7128462-7128176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
16, 194
               

               
Conread position:
               
22-313
               

               
Cow position:
               
chr6:47574851-47575141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 220
               

               
Conread position:
               
24-284
               

               
Cow position:
               
chr6:60274065-60273788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
24-287
               

               
Cow position:
               
chr6:6060620-6060349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
24-287
               

               
Cow position:
               
chr6:7119667-7119405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 197
               

               
Conread position:
               
24-290
               

               
Cow position:
               
chr6:32268929-32268659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
25-287
               

               
Cow position:
               
chr6:68816114-68816395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 274
               

               
Conread position:
               
27-290
               

               
Cow position:
               
chr6:15242782-15243067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
27-291
               

               
Cow position:
               
chr6:62669819-62670100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
27-329
               

               
Cow position:
               
chr6:60144249-60143933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 288
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr6:2078865-2078580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
34-314
               

               
Cow position:
               
chr6:23532614-23532899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 57
               

               
Conread position:
               
38-204
               

               
Cow position:
               
chr6:50976011-50976187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
44-298
               

               
Cow position:
               
chr6:41015006-41014738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
47-287
               

               
Cow position:
               
chr6:48097630-48097378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 236
               

               
Conread position:
               
48-287
               

               
Cow position:
               
chr6:26155125-26155372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
51-208
               

               
Cow position:
               
chr6:32517123-32516967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
51-304
               

               
Cow position:
               
chr6:67451396-67451125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
51-305
               

               
Cow position:
               
chr6:34119378-34119122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
29, 176
               

               
Conread position:
               
51-313
               

               
Cow position:
               
chr6:30023870-30024128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
53-286
               

               
Cow position:
               
chr6:21293518-21293274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
53-287
               

               
Cow position:
               
chr6:45690624-45690393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
61-290
               

               
Cow position:
               
chr6:58725362-58725595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
64-303
               

               
Cow position:
               
chr6:57079420-57079667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
72-281
               

               
Cow position:
               
chr6:13653356-13653564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
149, 76
               

               
Conread position:
               
72-281
               

               
Cow position:
               
chr6:58459725-58459936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
72-282
               

               
Cow position:
               
chr6:9718909-9718697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 38
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr6:6168691-6168915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr6:42034775-42034998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
73-285
               

               
Cow position:
               
chr6:33450966-33450754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
137, 127
               

               
Conread position:
               
73-290
               

               
Cow position:
               
chr6:3351031-3351256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
73-296
               

               
Cow position:
               
chr6:10105977-10105748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 203
               

               
Conread position:
               
73-313
               

               
Cow position:
               
chr6:50504460-50504706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 239
               

               
Conread position:
               
74-290
               

               
Cow position:
               
chr6:25615090-25614862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
74-290
               

               
Cow position:
               
chr6:53546040-53546257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 153
               

               
Conread position:
               
74-314
               

               
Cow position:
               
chr6:61109792-61110030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 98
               

               
Conread position:
               
75-314
               

               
Cow position:
               
chr6:37395395-37395153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 218
               

               
Conread position:
               
76-313
               

               
Cow position:
               
chr6:1941823-1941585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
79-234
               

               
Cow position:
               
chr6:61569642-61569799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
79-278
               

               
Cow position:
               
chr6:36920964-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 57
               

               
Conread position:
               
80-291
               

               
Cow position:
               
chr6:63065837-63066066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
80-298
               

               
Cow position:
               
chr6:29775633-29775854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 99
               

               
Conread position:
               
80-300
               

               
Cow position:
               
chr6:60850712-60850939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
62, 14
               

               
Conread position:
               
80-313
               

               
Cow position:
               
chr6:21470418-21470182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
80-313
               

               
Cow position:
               
chr6:66839209-66839443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
67, 42
               

               
Conread position:
               
81-298
               

               
Cow position:
               
chr6:44636487-44636278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
81-306
               

               
Cow position:
               
chr6:41657276-41657509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 162
               

               
Conread position:
               
85-212
               

               
Cow position:
               
chr6:43651768-43651899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
85-284
               

               
Cow position:
               
chr6:1871182-1870975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
85-291
               

               
Cow position:
               
chr6:12623531-12623738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 87
               

               
Conread position:
               
86-313
               

               
Cow position:
               
chr6:62056631-62056863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
87-228
               

               
Cow position:
               
chr6:18422972-18422825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
91-312
               

               
Cow position:
               
chr6:57320562-57320349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
134, 57
               

               
Conread position:
               
98-313
               

               
Cow position:
               
chr6:51933583-51933790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
99-235
               

               
Cow position:
               
chr6:54349724-54349863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
100-290
               

               
Cow position:
               
chr6:16090934-16091125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 115
               

               
Conread position:
               
100-290
               

               
Cow position:
               
chr6:23938091-23938279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
47, 127
               

               
Conread position:
               
101-287
               

               
Cow position:
               
chr6:2584974-2585166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
102-286
               

               
Cow position:
               
chr6:5601735-5601924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
102-300
               

               
Cow position:
               
chr6:12761312-12761518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
108-287
               

               
Cow position:
               
chr6:24905668-24905847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
110-312
               

               
Cow position:
               
chr6:3936825-3937040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
110-313
               

               
Cow position:
               
chr6:66978910-66979123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
112-290
               

               
Cow position:
               
chr6:21350990-21350803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr6:36537317-36537114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 192
               

               
Conread position:
               
114-298
               

               
Cow position:
               
chr6:41226785-41226611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
115-314
               

               
Cow position:
               
chr6:21083495-21083289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
118-290
               

               
Cow position:
               
chr6:37994261-37994432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
118-325
               

               
Cow position:
               
chr6:63168715-63168498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
119-286
               

               
Cow position:
               
chr6:60186613-60186430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
134-287
               

               
Cow position:
               
chr6:2757852-2758007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
138-290
               

               
Cow position:
               
chr6:7291388-7291539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
141-290
               

               
Cow position:
               
chr6:66058632-66058481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
144-290
               

               
Cow position:
               
chr6:58173428-58173570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
145-275
               

               
Cow position:
               
chr6:47698684-47698816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
145-287
               

               
Cow position:
               
chr6:2014208-2014350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
145-290
               

               
Cow position:
               
chr6:4699787-4699933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
145-290
               

               
Cow position:
               
chr6:38032937-38033086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
145-290
               

               
Cow position:
               
chr6:63182368-63182513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
67, 89
               

               
Conread position:
               
146-290
               

               
Cow position:
               
chr6:32006374-32006228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
146-299
               

               
Cow position:
               
chr6:54406719-54406566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
147-313
               

               
Cow position:
               
chr6:8726759-8726928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
153-279
               

               
Cow position:
               
chr6:53235565-53235436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
153-287
               

               
Cow position:
               
chr6:1945043-1945183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
157-299
               

               
Cow position:
               
chr6:43770807-43770665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-290
               

               
Cow position:
               
chr6:47673055-47672924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
159-315
               

               
Cow position:
               
chr6:21347057-21346900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 148
               

               
Conread position:
               
165-310
               

               
Cow position:
               
chr6:11262846-11262989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
166-290
               

               
Cow position:
               
chr6:59759271-59759397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
173-281
               

               
Cow position:
               
chr6:33865034-33864924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 37
               
Show alignments to all cow chromosomes.