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Cow genome map

           
Conread name:
           
Ss1.1-Pig2-104J14.5
        

               
Conread position:
               
1-101
               

               
Cow position:
               
chr1:51684753-51684653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-101
               

               
Cow position:
               
chr1:65909479-65909376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr1:63905520-63905626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr1:79165133-79165241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-109
               

               
Cow position:
               
chr1:9534124-9534017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr1:484514-484625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr1:31348488-31348600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-111
               

               
Cow position:
               
chr1:42398242-42398357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-111
               

               
Cow position:
               
chr1:42545834-42545944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-111
               

               
Cow position:
               
chr1:78809832-78809723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr1:45673661-45673548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 110
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr1:49317544-49317661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr1:79278495-79278610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr1:43703359-43703243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr1:4291112-4290991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 116
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr1:52956205-52956087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr1:7450082-7449959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr1:68951579-68951447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 58
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr1:68763731-68763892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr1:46030404-46030584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:51531718-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:44125695-44125884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:89485528-89485342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 160
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:24534302-24534494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:75967383-75967185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:11770338-11770545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:39122176-39122359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr1:57395978-57396183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:97806740-97806536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:77880784-77880973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
143, 58
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:39069003-39069210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:76470607-76470400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:53613242-53613441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:57264044-57264246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
116, 65
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:74084243-74084449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 55
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr1:57297428-57297235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
66, 133
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:52506603-52506806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:56711667-56711879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
88, 207
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:4032580-4032370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:54258514-54258301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:7748172-7747976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 115
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:53374383-53374165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:54199430-54199650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:72068887-72069097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:21131143-21131357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:48444242-48444452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:100770797-100771006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 183
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:22448635-22448857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:51909692-51909897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 117
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:79591059-79590827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:83593851-83594049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
62, 114
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:90640983-90640752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr1:102647320-102647542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:20125566-20125335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 112
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:24528656-24528873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:33811881-33811658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:51968412-51968194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:56225418-56225202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:68845533-68845756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:69264762-69264546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 12
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:77462312-77462088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 58
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:81472825-81472603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:85596893-85596670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 91
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:91039223-91039435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:78184640-78184430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
61, 118
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:7752338-7752134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 115
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:102756477-102756700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
2-116
               

               
Cow position:
               
chr1:51654362-51654246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 114
               

               
Conread position:
               
2-118
               

               
Cow position:
               
chr1:20002288-20002407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr1:40531162-40531282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr1:63530525-63530408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:72141515-72141312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr1:96184067-96184263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 58
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr1:42555214-42555012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr1:31347965-31348168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr1:34856680-34856889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr1:29901024-29901218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr1:31414010-31414228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr1:72011858-72012072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
87, 104
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr1:2075389-2075601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr1:43352707-43352925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr1:76019745-76019956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr1:86512082-86511885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 107
               

               
Conread position:
               
3-91
               

               
Cow position:
               
chr1:89742046-89742135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
3-101
               

               
Cow position:
               
chr1:57420777-57420878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
3-106
               

               
Cow position:
               
chr1:53369155-53369054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-134
               

               
Cow position:
               
chr1:87095280-87095413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr1:38544514-38544705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr1:39418171-39418384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr1:101007670-101007891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr1:53425125-53424892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
87, 189
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr1:33331139-33331344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr1:89349911-89349700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
6-116
               

               
Cow position:
               
chr1:82443509-82443621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 110
               

               
Conread position:
               
6-191
               

               
Cow position:
               
chr1:84116345-84116141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
8-190
               

               
Cow position:
               
chr1:37309567-37309764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 170
               

               
Conread position:
               
9-126
               

               
Cow position:
               
chr1:51445824-51445704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr1:66898553-66898751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
11-201
               

               
Cow position:
               
chr1:44155192-44154991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
15-117
               

               
Cow position:
               
chr1:28563629-28563739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
20-206
               

               
Cow position:
               
chr1:77099616-77099817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 46
               

               
Conread position:
               
20-217
               

               
Cow position:
               
chr1:97536067-97535865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
21-201
               

               
Cow position:
               
chr1:24201814-24202010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
21-205
               

               
Cow position:
               
chr1:732002-732201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
34-205
               

               
Cow position:
               
chr1:84456740-84456561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
165-501
               

               
Cow position:
               
chr1:88618675-88618349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
172-504
               

               
Cow position:
               
chr1:54199303-54199626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
216-498
               

               
Cow position:
               
chr1:4573557-4573280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
216-504
               

               
Cow position:
               
chr1:34300514-34300794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
216-504
               

               
Cow position:
               
chr1:43379987-43380275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
216-504
               

               
Cow position:
               
chr1:68817755-68818042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
216-504
               

               
Cow position:
               
chr1:71691854-71691568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 15
               

               
Conread position:
               
217-486
               

               
Cow position:
               
chr1:55705206-55705482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
217-504
               

               
Cow position:
               
chr1:45288831-45289119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
227-504
               

               
Cow position:
               
chr1:666395-666114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 61
               

               
Conread position:
               
228-488
               

               
Cow position:
               
chr1:64804075-64804339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
230-504
               

               
Cow position:
               
chr1:33720143-33719868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 52
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr1:57900721-57900987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr1:22467955-22467684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
250-504
               

               
Cow position:
               
chr1:76222682-76222937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
251-494
               

               
Cow position:
               
chr1:102784963-102784724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
262-504
               

               
Cow position:
               
chr1:33717220-33716975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
267-501
               

               
Cow position:
               
chr1:28176998-28176757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr1:13414018-13413781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr1:63434816-63435049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
268-493
               

               
Cow position:
               
chr1:55357299-55357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chr1:18936848-18937080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
270-456
               

               
Cow position:
               
chr1:51654398-51654212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
270-495
               

               
Cow position:
               
chr1:4291147-4290919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr1:45535692-45535456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
270-504
               

               
Cow position:
               
chr1:75744847-75744614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
271-498
               

               
Cow position:
               
chr1:44506954-44506728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
37, 133
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr1:3323851-3323612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
271-504
               

               
Cow position:
               
chr1:99136445-99136676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
274-483
               

               
Cow position:
               
chr1:68845504-68845711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
274-489
               

               
Cow position:
               
chr1:31348458-31348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 27
               

               
Conread position:
               
274-498
               

               
Cow position:
               
chr1:33811910-33811694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 94
               

               
Conread position:
               
274-499
               

               
Cow position:
               
chr1:20288101-20287876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
274-501
               

               
Cow position:
               
chr1:61735456-61735682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr1:4027850-4027615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr1:53308411-53308638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr1:68276395-68276161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr1:86113421-86113659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 141
               

               
Conread position:
               
275-487
               

               
Cow position:
               
chr1:43358032-43358244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
275-501
               

               
Cow position:
               
chr1:20002253-20002479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr1:53374413-53374189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr1:68618951-68619183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 185
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr1:91816792-91817020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr1:96478678-96478449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
275-504
               

               
Cow position:
               
chr1:99095344-99095117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
276-478
               

               
Cow position:
               
chr1:49433280-49433485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
276-501
               

               
Cow position:
               
chr1:11770312-11770536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr1:635173-634945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr1:37706993-37707215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr1:56658013-56657795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
276-504
               

               
Cow position:
               
chr1:81613369-81613139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr1:47009011-47008781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr1:57305813-57305586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr1:60707383-60707157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
282-467
               

               
Cow position:
               
chr1:6304888-6305078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
282-504
               

               
Cow position:
               
chr1:71045729-71045509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
283-501
               

               
Cow position:
               
chr1:56643616-56643832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
283-501
               

               
Cow position:
               
chr1:79663695-79663909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:3776644-3776860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:15547445-15547223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:45007438-45007220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:49131142-49131368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:68826931-68827151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:91142182-91142400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:91800629-91800854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:92963369-92963152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 71
               

               
Conread position:
               
286-500
               

               
Cow position:
               
chr1:36932128-36931917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chr1:11913912-11914123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chr1:34000884-34000659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
286-504
               

               
Cow position:
               
chr1:79591078-79590854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
287-504
               

               
Cow position:
               
chr1:82861751-82861527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chr1:29626943-29627161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
288-504
               

               
Cow position:
               
chr1:73584441-73584648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
289-501
               

               
Cow position:
               
chr1:51628531-51628745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr1:11853717-11853936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr1:50679315-50679532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr1:63596088-63596306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr1:79165117-79165338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr1:81913187-81913398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
291-504
               

               
Cow position:
               
chr1:31765421-31765641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 200
               

               
Conread position:
               
297-501
               

               
Cow position:
               
chr1:97806748-97806549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
298-442
               

               
Cow position:
               
chr1:68763725-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
298-498
               

               
Cow position:
               
chr1:41697017-41696817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
298-499
               

               
Cow position:
               
chr1:51445838-51445638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chr1:51394374-51394177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr1:68282761-68282551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr1:53622918-53622720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
298-503
               

               
Cow position:
               
chr1:93528657-93528445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:11226286-11226491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:21835902-21835702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:22448628-22448830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:22729010-22728801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:24655920-24655714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 105
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:34686149-34685949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:41252448-41252649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:42968356-42968562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:52753210-52753412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:54258521-54258321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:61724063-61724271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:63905513-63905720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:82884431-82884631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:85361819-85361609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:90864334-90864546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:93499582-93499376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:95215222-95215432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:95327192-95327399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
298-504
               

               
Cow position:
               
chr1:101634661-101634455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
299-504
               

               
Cow position:
               
chr1:89395559-89395345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
300-504
               

               
Cow position:
               
chr1:46939902-46940108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
300-504
               

               
Cow position:
               
chr1:98563119-98562914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
303-504
               

               
Cow position:
               
chr1:51531720-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
306-501
               

               
Cow position:
               
chr1:874598-874400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
306-501
               

               
Cow position:
               
chr1:81180026-81180223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
306-502
               

               
Cow position:
               
chr1:54478272-54478078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
172, 89
               

               
Conread position:
               
306-504
               

               
Cow position:
               
chr1:7350490-7350292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
307-465
               

               
Cow position:
               
chr1:43340665-43340830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
307-467
               

               
Cow position:
               
chr1:74956074-74956233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
307-467
               

               
Cow position:
               
chr1:75382941-75382782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
307-498
               

               
Cow position:
               
chr1:3137876-3137693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 95
               

               
Conread position:
               
307-499
               

               
Cow position:
               
chr1:30504418-30504230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chr1:12595957-12596143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chr1:52994967-52994782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr1:19998094-19998278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr1:55146749-55146558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr1:61725165-61725356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr1:72286110-72286292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr1:82337834-82338028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr1:90640978-90640782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 179
               

               
Conread position:
               
307-503
               

               
Cow position:
               
chr1:36874960-36874770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:3340882-3340691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:5873024-5873217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:20204975-20204780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:21093039-21092845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:21787277-21787080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:31414014-31414204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:31934459-31934267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:35162356-35162158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 178
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:36613328-36613521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:41004416-41004613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:42256556-42256756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:43505471-43505277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:44136519-44136708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 48
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:48105487-48105680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:48730881-48731074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:53520859-53520660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:55135779-55135590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:61391842-61392037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:61564743-61564545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:78857375-78857568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:81563683-81563487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 45
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:94226605-94226794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
307-504
               

               
Cow position:
               
chr1:100706080-100705887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
308-487
               

               
Cow position:
               
chr1:19545153-19545329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr1:11873415-11873601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr1:71257532-71257729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr1:84786721-84786525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
51, 176
               

               
Conread position:
               
308-504
               

               
Cow position:
               
chr1:95057002-95056808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
6, 47
               

               
Conread position:
               
309-504
               

               
Cow position:
               
chr1:78810984-78810790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
310-489
               

               
Cow position:
               
chr1:7186739-7186556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
310-501
               

               
Cow position:
               
chr1:3035049-3035236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr1:8532270-8532459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr1:56748538-56748344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 174
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr1:88652574-88652385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 57
               

               
Conread position:
               
310-504
               

               
Cow position:
               
chr1:99118333-99118139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
312-504
               

               
Cow position:
               
chr1:22827109-22826923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
313-504
               

               
Cow position:
               
chr1:55686276-55686465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
315-504
               

               
Cow position:
               
chr1:27358889-27358697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chr1:8560-8376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chr1:29935443-29935627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
316-504
               

               
Cow position:
               
chr1:52488023-52488204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 36
               

               
Conread position:
               
317-501
               

               
Cow position:
               
chr1:74013322-74013510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
326-496
               

               
Cow position:
               
chr1:65638137-65637966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 164
               

               
Conread position:
               
329-504
               

               
Cow position:
               
chr1:54484997-54484822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
329-504
               

               
Cow position:
               
chr1:55163846-55163676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
334-500
               

               
Cow position:
               
chr1:25281756-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 20
               

               
Conread position:
               
335-501
               

               
Cow position:
               
chr1:61351071-61350904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
340-504
               

               
Cow position:
               
chr1:26159514-26159678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
360-504
               

               
Cow position:
               
chr1:54294763-54294908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
362-501
               

               
Cow position:
               
chr1:61742076-61742211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
121, 38
               
Show alignments to all cow chromosomes.